283629

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 4178885..4179468 Replicon chromosome
Accession NZ_CP127228
Organism Pseudomonas tohonis strain KRS022

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QQ016_RS18875 Protein ID WP_285960433.1
Coordinates 4178885..4179265 (-) Length 127 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QQ016_RS18880 Protein ID WP_285960434.1
Coordinates 4179268..4179468 (-) Length 67 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QQ016_RS18860 4174964..4176379 + 1416 WP_213627339.1 acetyl-CoA carboxylase biotin carboxylase subunit -
QQ016_RS18865 4176396..4178216 + 1821 WP_173178174.1 sodium-extruding oxaloacetate decarboxylase subunit alpha -
QQ016_RS18870 4178379..4178819 + 441 WP_173178175.1 CBS domain-containing protein -
QQ016_RS18875 4178885..4179265 - 381 WP_285960433.1 PIN domain-containing protein Toxin
QQ016_RS18880 4179268..4179468 - 201 WP_285960434.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
QQ016_RS18885 4179700..4180689 - 990 WP_285960435.1 asparaginase -
QQ016_RS18890 4180850..4182298 - 1449 WP_285960436.1 alanine/glycine:cation symporter family protein -
QQ016_RS18895 4182467..4183285 + 819 WP_173178179.1 helix-turn-helix transcriptional regulator -
QQ016_RS18900 4183341..4184033 + 693 WP_271104329.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(3-114)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 127 a.a.        Molecular weight: 13905.16 Da        Isoelectric Point: 6.6301

>T283629 WP_285960433.1 NZ_CP127228:c4179265-4178885 [Pseudomonas tohonis]
MSVLVDTSVWIDHFRNGNEELVRLIGQDQVLVHPLVIGEIACGTPPAPRAETLRNLSLLLPCTQATLAEVMAFIEREQLY
GLGCGWVDLTLLASTLMTPGARLWTLDRRLAQLAGRFGVAHHPSRH

Download         Length: 381 bp

Antitoxin


Download         Length: 67 a.a.        Molecular weight: 7343.35 Da        Isoelectric Point: 4.9803

>AT283629 WP_285960434.1 NZ_CP127228:c4179468-4179268 [Pseudomonas tohonis]
MRTTVTLDDALYQQALEMADPDMDKADIFREAFKTFVRVQAGKRLAALGGKAPQMQDVPRRGDESA

Download         Length: 201 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References