Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2008136..2008281 | Replicon | chromosome |
| Accession | NZ_CP127153 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain T1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2008172..2008274 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2008136..2008281 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QP513_RS09865 (QP513_09865) | 2003266..2005326 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QP513_RS09870 (QP513_09870) | 2005330..2005989 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QP513_RS09875 (QP513_09875) | 2006068..2006298 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QP513_RS09880 (QP513_09880) | 2006411..2006785 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QP513_RS09885 (QP513_09885) | 2006789..2007658 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QP513_RS09890 (QP513_09890) | 2007675..2008013 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2008136..2008281 | - | 146 | - | - | Antitoxin |
| - | 2008172..2008274 | + | 103 | - | - | Toxin |
| QP513_RS09895 (QP513_09895) | 2008649..2008792 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QP513_RS09900 (QP513_09900) | 2008897..2009865 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QP513_RS09905 (QP513_09905) | 2010022..2010675 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QP513_RS09910 (QP513_09910) | 2010672..2010863 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QP513_RS09915 (QP513_09915) | 2010961..2011200 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QP513_RS09920 (QP513_09920) | 2011316..2012749 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283580 NZ_CP127153:2008172-2008274 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT283580 NZ_CP127153:c2008281-2008136 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
