Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 1832346..1832937 Replicon chromosome
Accession NZ_CP126994
Organism Acidisoma sp. PAMC 29798

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag QP803_RS08795 Protein ID WP_284947391.1
Coordinates 1832629..1832937 (-) Length 103 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID -
Locus tag QP803_RS08790 Protein ID WP_284947390.1
Coordinates 1832346..1832648 (-) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QP803_RS08765 1827958..1829211 + 1254 WP_284947385.1 sodium:proton antiporter -
QP803_RS08770 1829234..1830031 - 798 WP_284947386.1 tetratricopeptide repeat protein -
QP803_RS08775 1830145..1830657 - 513 WP_284947387.1 DedA family protein -
QP803_RS08780 1830737..1831672 - 936 WP_284947388.1 ferritin-like domain-containing protein -
QP803_RS08785 1831751..1832218 - 468 WP_284947389.1 hypothetical protein -
QP803_RS08790 1832346..1832648 - 303 WP_284947390.1 BrnA antitoxin family protein Antitoxin
QP803_RS08795 1832629..1832937 - 309 WP_284947391.1 BrnT family toxin Toxin
QP803_RS08800 1832982..1834496 - 1515 WP_284947392.1 DNA polymerase Y family protein -
QP803_RS08805 1834417..1835139 - 723 WP_284947393.1 damage-inducible mutagenesis protein -
QP803_RS08810 1835420..1835962 - 543 WP_284947394.1 hypothetical protein -
QP803_RS08815 1836189..1837160 - 972 WP_284947395.1 spore coat protein U domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(8-93)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(16-94)


Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11946.40 Da        Isoelectric Point: 6.0906

>T283477 WP_284947391.1 NZ_CP126994:c1832937-1832629 [Acidisoma sp. PAMC 29798]
MAGIRFEWDEAKSRSNQRKHGLSFEEASQVFNDPMHFSVLDRIEGHEYRWRTLGLIGGFMILMVAHTMTETDAEGDSIDV
IRIISARRADRMERRRYENENG

Download         Length: 309 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11328.04 Da        Isoelectric Point: 10.3861

>AT283477 WP_284947390.1 NZ_CP126994:c1832648-1832346 [Acidisoma sp. PAMC 29798]
MKTKTVSFTATTLPRLTDEQRASLTSLAARPDSEIDYSDIPEITDAQLKTGVRGRFYRPVKMQITARVDADVLEWLKSQG
KGYQARLNAILRREMLNALK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References