283467

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 2018524..2019037 Replicon chromosome
Accession NZ_CP126992
Organism Pseudomonas syringae pv. antirrhini str. 126

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QQF68_RS09310 Protein ID WP_080395495.1
Coordinates 2018524..2018808 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S6UR83
Locus tag QQF68_RS09315 Protein ID WP_005740683.1
Coordinates 2018798..2019037 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QQF68_RS09290 (QQF68_09290) 2013933..2014418 + 486 WP_007245243.1 DUF2269 domain-containing protein -
QQF68_RS09295 (QQF68_09295) 2014670..2016598 + 1929 WP_057418442.1 methyl-accepting chemotaxis protein -
QQF68_RS09300 (QQF68_09300) 2016627..2017559 - 933 WP_057418441.1 DMT family transporter -
QQF68_RS09305 (QQF68_09305) 2017634..2018488 + 855 WP_057418440.1 LysR family transcriptional regulator -
QQF68_RS09310 (QQF68_09310) 2018524..2018808 - 285 WP_080395495.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QQF68_RS09315 (QQF68_09315) 2018798..2019037 - 240 WP_005740683.1 ribbon-helix-helix protein, CopG family Antitoxin
QQF68_RS09320 (QQF68_09320) 2019206..2020222 - 1017 WP_003376162.1 1-aminocyclopropane-1-carboxylate deaminase -
QQF68_RS09325 (QQF68_09325) 2020388..2020894 + 507 WP_024666116.1 winged helix-turn-helix transcriptional regulator -
QQF68_RS09330 (QQF68_09330) 2021042..2021950 + 909 WP_054089894.1 DUF808 domain-containing protein -
QQF68_RS09335 (QQF68_09335) 2022076..2022861 - 786 WP_005765329.1 outer membrane protein OmpK -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-40)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10798.55 Da        Isoelectric Point: 10.4223

>T283467 WP_080395495.1 NZ_CP126992:c2018808-2018524 [Pseudomonas syringae pv. antirrhini str. 126]
MQVEWLKTALKNLDDEAAYISLENPAAAVAFVEAIQISVKQLASFPALGREGRIAGTREWPLPDWSYLIPYRIRNGRLQV
LRIFHTRRQPPLVR

Download         Length: 285 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8753.90 Da        Isoelectric Point: 4.5822

>AT283467 WP_005740683.1 NZ_CP126992:c2019037-2018798 [Pseudomonas syringae pv. antirrhini str. 126]
MSVMSLRLPDEMADTLAHLAKATGRSKSFLALNALREYLTREAWQIAEIQRAIEEADAGEFASEEDVKAVMNKWANNAG

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0K8M7Q4

References