Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013112..2013257 | Replicon | chromosome |
| Accession | NZ_CP126987 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain T3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013148..2013250 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013112..2013257 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QP573_RS09665 | 2008242..2010302 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QP573_RS09670 | 2010306..2010965 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QP573_RS09675 | 2011044..2011274 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QP573_RS09680 | 2011387..2011761 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| QP573_RS09685 | 2011765..2012634 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| QP573_RS09690 | 2012651..2012989 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2013112..2013257 | - | 146 | - | - | Antitoxin |
| - | 2013148..2013250 | + | 103 | - | - | Toxin |
| QP573_RS09695 | 2013626..2013769 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| QP573_RS09700 | 2013874..2014842 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QP573_RS09705 | 2014999..2015652 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| QP573_RS09710 | 2015649..2015840 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QP573_RS09715 | 2015938..2016177 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QP573_RS09720 | 2016293..2017726 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283455 NZ_CP126987:2013148-2013250 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT283455 NZ_CP126987:c2013257-2013112 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
