Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1876383..1876528 | Replicon | chromosome |
| Accession | NZ_CP126974 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain 111-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1876419..1876521 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1876383..1876528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QPX97_RS09025 (QPX97_09025) | 1871513..1873573 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QPX97_RS09030 (QPX97_09030) | 1873577..1874236 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QPX97_RS09035 (QPX97_09035) | 1874315..1874545 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QPX97_RS09040 (QPX97_09040) | 1874658..1875032 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QPX97_RS09045 (QPX97_09045) | 1875036..1875905 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| QPX97_RS09050 (QPX97_09050) | 1875922..1876260 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1876383..1876528 | - | 146 | - | - | Antitoxin |
| - | 1876419..1876521 | + | 103 | - | - | Toxin |
| QPX97_RS09055 (QPX97_09055) | 1876897..1877040 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QPX97_RS09060 (QPX97_09060) | 1877145..1878113 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| QPX97_RS09065 (QPX97_09065) | 1878270..1878923 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| QPX97_RS09070 (QPX97_09070) | 1878920..1879111 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QPX97_RS09075 (QPX97_09075) | 1879209..1879448 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QPX97_RS09080 (QPX97_09080) | 1879564..1880997 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283420 NZ_CP126974:1876419-1876521 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT283420 NZ_CP126974:c1876528-1876383 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
