Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 1455812..1456437 Replicon chromosome
Accession NC_018661
Organism Escherichia coli O104:H4 str. 2009EL-2071

Toxin (Protein)


Gene name vapC Uniprot ID U9YZ02
Locus tag O3O_RS07265 Protein ID WP_000911329.1
Coordinates 1456039..1456437 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID U9XQV3
Locus tag O3O_RS07260 Protein ID WP_000450524.1
Coordinates 1455812..1456039 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O3O_RS07230 1451614..1452084 - 471 WP_001068682.1 thioredoxin-dependent thiol peroxidase -
O3O_RS07235 1452084..1452656 - 573 WP_000176187.1 glycine cleavage system transcriptional repressor -
O3O_RS07240 1452802..1453680 + 879 WP_001295469.1 4-hydroxy-tetrahydrodipicolinate synthase -
O3O_RS07245 1453697..1454731 + 1035 WP_001297320.1 outer membrane protein assembly factor BamC -
O3O_RS07255 1454944..1455657 + 714 WP_001295467.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
O3O_RS07260 1455812..1456039 + 228 WP_000450524.1 toxin-antitoxin system antitoxin VapB Antitoxin
O3O_RS07265 1456039..1456437 + 399 WP_000911329.1 tRNA(fMet)-specific endonuclease VapC Toxin
O3O_RS07270 1456584..1457447 + 864 WP_001267498.1 neutral zinc metallopeptidase -
O3O_RS07275 1457462..1459477 + 2016 WP_000829294.1 tRNA cytosine(34) acetyltransferase TmcA -
O3O_RS07280 1459551..1460249 + 699 WP_000679823.1 esterase -
O3O_RS07285 1460359..1460559 - 201 WP_000383836.1 YpfN family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-125)

Antitoxin

SpoVT-AbrB domain

(7-52)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14924.23 Da        Isoelectric Point: 8.5325

>T28339 WP_000911329.1 NC_018661:1456039-1456437 [Escherichia coli O104:H4 str. 2009EL-2071]
MLKFMLDTNICIFTIKNKPVHVRERFNLNSGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLEVLDYDSAAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTNNTREFERVAGIRLEDWS

Download         Length: 399 bp

>T28339 NC_018661:1456039-1456437 [Escherichia coli O104:H4 str. 2009EL-2071]
ATGCTGAAATTCATGCTGGATACCAATATCTGTATTTTCACTATTAAGAATAAACCAGTACATGTCAGAGAGCGGTTTAA
CCTGAATTCTGGCCGGATGTGTATAAGTTCTGTAACATTGATGGAGCTTATCTATGGGGCAGAAAAAAGTCAGATGCCAG
AACGCAATTTGGCGGTGATTGAAGGTTTCGTATCTCGTTTGGAAGTGCTTGATTATGATAGTGCTGCTGCGACGCATACC
GGGCAAATCAGGGCCGAGCTTGCCCGGCAGGGAAGGCCTGTTGGACCTTTTGACCAGATGATAGCGGGACATGCTCGCAG
TCGCGGTTTGATTGTGGTTACCAACAATACCCGAGAGTTTGAGCGAGTGGCGGGAATCAGACTAGAAGATTGGAGCTAA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8498.61 Da        Isoelectric Point: 4.3867

>AT28339 WP_000450524.1 NC_018661:1455812-1456039 [Escherichia coli O104:H4 str. 2009EL-2071]
METTVFLSNRSQAVRLPKAVALPEDVKKVEIIAIGRTRIITPAGESWDSWFDGENVSADFMDIRDQPAMQERESF

Download         Length: 228 bp

>AT28339 NC_018661:1455812-1456039 [Escherichia coli O104:H4 str. 2009EL-2071]
ATGGAAACTACTGTATTTTTAAGTAATCGCAGTCAGGCCGTCAGATTACCGAAAGCGGTCGCTCTGCCAGAGGATGTTAA
GAAAGTAGAAATTATTGCGATTGGTCGTACAAGAATCATCACTCCCGCCGGTGAGTCCTGGGACAGTTGGTTTGATGGCG
AAAATGTGAGTGCGGATTTTATGGATATCCGTGATCAACCCGCAATGCAGGAAAGGGAATCATTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0E0XW84

Antitoxin

Source ID Structure
AlphaFold DB A0A829CM33

References