Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2156412..2156680 | Replicon | chromosome |
| Accession | NZ_CP126948 | ||
| Organism | Escherichia coli O78:H4 strain APEC E14033 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2156540..2156642 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2156412..2156680 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA23_RS10395 | 2152965..2153627 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA23_RS10400 | 2153651..2154307 | - | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA23_RS10405 | 2154409..2154639 | - | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| QQA23_RS10410 | 2154778..2155152 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA23_RS10415 | 2155156..2156028 | + | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| QQA23_RS10420 | 2156041..2156382 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2156412..2156680 | - | 269 | - | - | Antitoxin |
| - | 2156540..2156642 | + | 103 | - | - | Toxin |
| QQA23_RS10425 | 2156777..2157433 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| QQA23_RS10430 | 2157434..2157625 | - | 192 | WP_001317886.1 | YebW family protein | - |
| QQA23_RS10435 | 2157730..2157966 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA23_RS10440 | 2158084..2159523 | - | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283313 NZ_CP126948:2156540-2156642 [Escherichia coli O78:H4]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283313 NZ_CP126948:c2156680-2156412 [Escherichia coli O78:H4]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
