Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2297637..2297905 | Replicon | chromosome |
| Accession | NZ_CP126944 | ||
| Organism | Escherichia coli O1:K1:H7 strain APEC E16002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2297765..2297867 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2297637..2297905 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA28_RS11230 | 2294191..2294853 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA28_RS11235 | 2294876..2295532 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA28_RS11240 | 2295634..2295864 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA28_RS11245 | 2296003..2296377 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA28_RS11250 | 2296381..2297253 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA28_RS11255 | 2297266..2297607 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2297637..2297905 | - | 269 | - | - | Antitoxin |
| - | 2297765..2297867 | + | 103 | - | - | Toxin |
| QQA28_RS11260 | 2298002..2298658 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| QQA28_RS11265 | 2298659..2298850 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA28_RS11270 | 2298955..2299191 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA28_RS11275 | 2299309..2300748 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283239 NZ_CP126944:2297765-2297867 [Escherichia coli O1:K1:H7]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283239 NZ_CP126944:c2297905-2297637 [Escherichia coli O1:K1:H7]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
