Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2297528..2297796 | Replicon | chromosome |
| Accession | NZ_CP126942 | ||
| Organism | Escherichia coli O1:K1:H7 strain APEC E18006 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2297656..2297758 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2297528..2297796 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA29_RS11230 | 2294082..2294744 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA29_RS11235 | 2294767..2295423 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA29_RS11240 | 2295525..2295755 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA29_RS11245 | 2295894..2296268 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA29_RS11250 | 2296272..2297144 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA29_RS11255 | 2297157..2297498 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2297528..2297796 | - | 269 | - | - | Antitoxin |
| - | 2297656..2297758 | + | 103 | - | - | Toxin |
| QQA29_RS11260 | 2297893..2298549 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| QQA29_RS11265 | 2298550..2298741 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA29_RS11270 | 2298846..2299082 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA29_RS11275 | 2299200..2300639 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283204 NZ_CP126942:2297656-2297758 [Escherichia coli O1:K1:H7]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283204 NZ_CP126942:c2297796-2297528 [Escherichia coli O1:K1:H7]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
