Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2343547..2343815 | Replicon | chromosome |
| Accession | NZ_CP126940 | ||
| Organism | Escherichia coli O2:K1:H7 strain APEC E18055 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2343675..2343777 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2343547..2343815 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA30_RS11480 | 2340101..2340763 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA30_RS11485 | 2340786..2341442 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA30_RS11490 | 2341544..2341774 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA30_RS11495 | 2341913..2342287 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA30_RS11500 | 2342291..2343163 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA30_RS11505 | 2343176..2343517 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2343547..2343815 | - | 269 | - | - | Antitoxin |
| - | 2343675..2343777 | + | 103 | - | - | Toxin |
| QQA30_RS11510 | 2343912..2344568 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| QQA30_RS11515 | 2344569..2344760 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA30_RS11520 | 2344865..2345101 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA30_RS11525 | 2345219..2346658 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283175 NZ_CP126940:2343675-2343777 [Escherichia coli O2:K1:H7]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283175 NZ_CP126940:c2343815-2343547 [Escherichia coli O2:K1:H7]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
