Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172145..2172413 | Replicon | chromosome |
| Accession | NZ_CP126937 | ||
| Organism | Escherichia coli O2:K1:H4 strain APEC E19019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172273..2172375 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172145..2172413 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA31_RS10445 | 2168699..2169361 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA31_RS10450 | 2169384..2170040 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA31_RS10455 | 2170142..2170372 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA31_RS10460 | 2170511..2170885 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA31_RS10465 | 2170889..2171761 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA31_RS10470 | 2171774..2172115 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2172145..2172413 | - | 269 | - | - | Antitoxin |
| - | 2172273..2172375 | + | 103 | - | - | Toxin |
| QQA31_RS10475 | 2172510..2173166 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| QQA31_RS10480 | 2173167..2173358 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA31_RS10485 | 2173463..2173699 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA31_RS10490 | 2173817..2175256 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283152 NZ_CP126937:2172273-2172375 [Escherichia coli O2:K1:H4]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283152 NZ_CP126937:c2172413-2172145 [Escherichia coli O2:K1:H4]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
