Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2216800..2217071 | Replicon | chromosome |
| Accession | NZ_CP126931 | ||
| Organism | Escherichia coli O78:H51 strain APEC E19025 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2216930..2217033 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2216800..2217071 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA25_RS10770 | 2213355..2214017 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA25_RS10775 | 2214041..2214697 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA25_RS10780 | 2214799..2215029 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA25_RS10785 | 2215168..2215542 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QQA25_RS10790 | 2215546..2216418 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| QQA25_RS10795 | 2216431..2216772 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2216800..2217071 | - | 272 | - | - | Antitoxin |
| - | 2216930..2217033 | + | 104 | - | - | Toxin |
| QQA25_RS10800 | 2217168..2217824 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QQA25_RS10805 | 2217825..2218016 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA25_RS10810 | 2218121..2218357 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA25_RS10815 | 2218475..2219914 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T283088 NZ_CP126931:2216930-2217033 [Escherichia coli O78:H51]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT283088 NZ_CP126931:c2217071-2216800 [Escherichia coli O78:H51]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
