Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2721934..2722202 | Replicon | chromosome |
| Accession | NZ_CP126928 | ||
| Organism | Escherichia coli O2:K1:H4 strain APEC E12053 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2721972..2722074 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2721934..2722202 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA27_RS13300 | 2719091..2720530 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QQA27_RS13305 | 2720648..2720884 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QQA27_RS13310 | 2720989..2721180 | + | 192 | WP_001296140.1 | YebW family protein | - |
| QQA27_RS13315 | 2721181..2721837 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 2721934..2722202 | + | 269 | - | - | Antitoxin |
| - | 2721972..2722074 | - | 103 | - | - | Toxin |
| QQA27_RS13320 | 2722232..2722573 | - | 342 | WP_000984819.1 | YebY family protein | - |
| QQA27_RS13325 | 2722586..2723458 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA27_RS13330 | 2723462..2723836 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA27_RS13335 | 2723975..2724205 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA27_RS13340 | 2724307..2724963 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA27_RS13345 | 2724986..2725648 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283054 NZ_CP126928:c2722074-2721972 [Escherichia coli O2:K1:H4]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283054 NZ_CP126928:2721934-2722202 [Escherichia coli O2:K1:H4]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
