Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2427815..2428083 | Replicon | chromosome |
| Accession | NZ_CP126926 | ||
| Organism | Escherichia coli O2:K1:H5 strain APEC E19035 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2427943..2428045 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2427815..2428083 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQA32_RS11805 | 2424369..2425031 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QQA32_RS11810 | 2425054..2425710 | - | 657 | WP_021512072.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QQA32_RS11815 | 2425812..2426042 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QQA32_RS11820 | 2426181..2426555 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QQA32_RS11825 | 2426559..2427431 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| QQA32_RS11830 | 2427444..2427785 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 2427815..2428083 | - | 269 | - | - | Antitoxin |
| - | 2427943..2428045 | + | 103 | - | - | Toxin |
| QQA32_RS11835 | 2428180..2428836 | + | 657 | Protein_2319 | protein-serine/threonine phosphatase | - |
| QQA32_RS11840 | 2428837..2429028 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QQA32_RS11845 | 2429133..2429369 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QQA32_RS11850 | 2429487..2430926 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T283021 NZ_CP126926:2427943-2428045 [Escherichia coli O2:K1:H5]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT283021 NZ_CP126926:c2428083-2427815 [Escherichia coli O2:K1:H5]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
