Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 489964..490601 Replicon chromosome
Accession NZ_CP126696
Organism Bacillus amyloliquefaciens strain GZY63

Toxin (Protein)


Gene name mazF Uniprot ID G4NU33
Locus tag QPX68_RS02505 Protein ID WP_003156187.1
Coordinates 490251..490601 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID I2HMS5
Locus tag QPX68_RS02500 Protein ID WP_003156188.1
Coordinates 489964..490245 (+) Length 94 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QPX68_RS02480 486329..486928 - 600 WP_032872997.1 rhomboid family intramembrane serine protease -
QPX68_RS02485 487021..487386 + 366 WP_007609580.1 holo-ACP synthase -
QPX68_RS02490 487551..488558 + 1008 WP_032872999.1 outer membrane lipoprotein carrier protein LolA -
QPX68_RS02495 488675..489844 + 1170 WP_032873001.1 alanine racemase -
QPX68_RS02500 489964..490245 + 282 WP_003156188.1 type II toxin-antitoxin system antitoxin EndoAI Antitoxin
QPX68_RS02505 490251..490601 + 351 WP_003156187.1 type II toxin-antitoxin system endoribonuclease NdoA Toxin
QPX68_RS02510 490719..491540 + 822 WP_003156182.1 STAS domain-containing protein -
QPX68_RS02515 491545..491910 + 366 WP_003156180.1 RsbT antagonist protein RsbS -
QPX68_RS02520 491913..492314 + 402 WP_003156178.1 anti-sigma regulatory factor -
QPX68_RS02525 492326..493333 + 1008 WP_007609589.1 PP2C family protein-serine/threonine phosphatase -
QPX68_RS02530 493397..493726 + 330 WP_003156176.1 anti-sigma factor antagonist RsbV -
QPX68_RS02535 493723..494205 + 483 WP_007609591.1 anti-sigma B factor RsbW -
QPX68_RS02540 494171..494959 + 789 WP_032873003.1 RNA polymerase sigma factor SigB -
QPX68_RS02545 494959..495561 + 603 WP_007410234.1 PP2C family serine/threonine-protein phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(4-111)

Antitoxin

Ribbon-helix-helix protein, CopG

(12-45)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12977.98 Da        Isoelectric Point: 4.8781

>T283012 WP_003156187.1 NZ_CP126696:490251-490601 [Bacillus amyloliquefaciens]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF

Download         Length: 351 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10562.92 Da        Isoelectric Point: 6.4706

>AT283012 WP_003156188.1 NZ_CP126696:489964-490245 [Bacillus amyloliquefaciens]
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAEC
EAETTVERLVSGG

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4MDX
PDB 4ME7
PDB 1NE8

Antitoxin

Source ID Structure
AlphaFold DB I2HMS5

References