Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 932687..934317 Replicon chromosome
Accession NZ_CP126568
Organism Xanthomonas oryzae pv. oryzicola strain HB8

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag QPJ94_RS04265 Protein ID WP_263433147.1
Coordinates 933757..934317 (-) Length 187 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag QPJ94_RS04260 Protein ID WP_149621355.1
Coordinates 932687..933760 (-) Length 358 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QPJ94_RS04240 928562..928888 - 327 WP_024710580.1 hypothetical protein -
QPJ94_RS04245 929192..930472 - 1281 WP_024710581.1 amidohydrolase family protein -
QPJ94_RS04250 930469..931878 - 1410 WP_024710582.1 amidohydrolase -
QPJ94_RS04255 932018..932578 + 561 WP_044750878.1 DUF924 family protein -
QPJ94_RS04260 932687..933760 - 1074 WP_149621355.1 macro domain-containing protein Antitoxin
QPJ94_RS04265 933757..934317 - 561 WP_263433147.1 DUF4433 domain-containing protein Toxin
QPJ94_RS04270 934741..935667 - 927 WP_024710586.1 Grx4 family monothiol glutaredoxin -
QPJ94_RS04275 935713..936504 + 792 WP_024710587.1 polysaccharide deacetylase family protein -
QPJ94_RS04285 936808..937479 - 672 WP_024745633.1 class I SAM-dependent methyltransferase -
QPJ94_RS04290 937802..938452 - 651 WP_024710589.1 SGNH/GDSL hydrolase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(5-185)

Antitoxin

Macro domain

(18-129)


Sequences

Toxin        


Download         Length: 187 a.a.        Molecular weight: 21601.45 Da        Isoelectric Point: 7.5411

>T282965 WP_263433147.1 NZ_CP126568:c934317-933757 [Xanthomonas oryzae pv. oryzicola]
MHCGNAAVQSSSWVSIGNPELIDKRSSHPVPRPPGGFSNDYVPFYFTPFLPMLRNIHTAWGGIQRRPNEDIVILVSSLHH
VAERRWPFLFTDSHAYCQLASFYSDLSDLDKIDWPLLQARDFRRDPDDPAKFERYQAEALIHRHVPLDGLRGIVCHTDGL
QQTIERQLQERNLKLPVHTRTGWYFR

Download         Length: 561 bp

Antitoxin


Download         Length: 358 a.a.        Molecular weight: 40084.13 Da        Isoelectric Point: 6.0089

>AT282965 WP_149621355.1 NZ_CP126568:c933760-932687 [Xanthomonas oryzae pv. oryzicola]
MITFTQGNLLESGAEALVNTVNTVGVMGKGIALMFKERFKENFLRYAAACKDNQVRIGKIFVTEVNELDGPRWIINFPTK
QHWRGDSRIEWITEGLQDLHRFLIENKVKSIAIPPLGAGNGGLDRADVRPLIEEVLAGLDTDILVFEPTLKYQNVAKRSG
VEKLTPARALIAELVRRYWVLGMECGLLEIQKLAWFLERNIERAGLPELDLRFSAHKYGPYADRLRHLLNGLDGSYLHCD
KRISDADPLDVIWFDDNRKSFVQTYLLKSEAKQYIPALEATAALIDGFESPFGMELLATVDWLIVQEGISAQVADVREGI
RHWPGDQEAAARKDRLFDDRALGIALKRLASGAIAVA

Download         Length: 1074 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References