Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2190766..2190909 | Replicon | chromosome |
| Accession | NZ_CP126536 | ||
| Organism | Citrobacter freundii strain CRNMS1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2190801..2190904 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2190766..2190909 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QOK75_RS10705 | 2185917..2186819 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| QOK75_RS10710 | 2187139..2187330 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| QOK75_RS10715 | 2187823..2188413 | - | 591 | WP_125362611.1 | hypothetical protein | - |
| QOK75_RS10720 | 2188568..2188777 | + | 210 | WP_003844137.1 | hypothetical protein | - |
| QOK75_RS10725 | 2189036..2189410 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| QOK75_RS10730 | 2189414..2190286 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| QOK75_RS10735 | 2190307..2190645 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2190766..2190909 | - | 144 | - | - | Antitoxin |
| - | 2190801..2190904 | + | 104 | - | - | Toxin |
| QOK75_RS10740 | 2191058..2191699 | + | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| QOK75_RS10745 | 2191700..2191891 | - | 192 | WP_003034941.1 | YebW family protein | - |
| QOK75_RS10750 | 2191994..2192230 | - | 237 | WP_029139506.1 | YebV family protein | - |
| QOK75_RS10755 | 2192331..2193719 | - | 1389 | WP_197730871.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282941 NZ_CP126536:2190801-2190904 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT282941 NZ_CP126536:c2190909-2190766 [Citrobacter freundii]
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
