Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1944693..1944964 | Replicon | chromosome |
| Accession | NZ_CP126348 | ||
| Organism | Escherichia coli strain NN5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1944823..1944926 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1944693..1944964 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN227_RS09285 | 1941248..1941910 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QN227_RS09290 | 1941934..1942590 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QN227_RS09295 | 1942692..1942922 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QN227_RS09300 | 1943061..1943435 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QN227_RS09305 | 1943439..1944311 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| QN227_RS09310 | 1944324..1944665 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1944693..1944964 | - | 272 | - | - | Antitoxin |
| - | 1944823..1944926 | + | 104 | - | - | Toxin |
| QN227_RS09315 | 1945061..1945717 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QN227_RS09320 | 1945718..1945909 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QN227_RS09325 | 1946014..1946250 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QN227_RS09330 | 1946368..1947807 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282899 NZ_CP126348:1944823-1944926 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT282899 NZ_CP126348:c1944964-1944693 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
