Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998243..1998514 | Replicon | chromosome |
| Accession | NZ_CP126343 | ||
| Organism | Escherichia coli strain DAX4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998373..1998476 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998243..1998514 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN220_RS09555 | 1994798..1995460 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QN220_RS09560 | 1995484..1996140 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QN220_RS09565 | 1996242..1996472 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QN220_RS09570 | 1996611..1996985 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QN220_RS09575 | 1996989..1997861 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QN220_RS09580 | 1997874..1998215 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1998243..1998514 | - | 272 | - | - | Antitoxin |
| - | 1998373..1998476 | + | 104 | - | - | Toxin |
| QN220_RS09585 | 1998611..1999267 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| QN220_RS09590 | 1999268..1999459 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QN220_RS09595 | 1999564..1999800 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QN220_RS09600 | 1999918..2001357 | - | 1440 | WP_113441288.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282854 NZ_CP126343:1998373-1998476 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT282854 NZ_CP126343:c1998514-1998243 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
