Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3015398..3015549 | Replicon | chromosome |
| Accession | NZ_CP126341 | ||
| Organism | Enterobacter cloacae strain TL15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3015411..3015514 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3015398..3015549 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN095_RS14205 (QN095_14205) | 3011674..3013116 | + | 1443 | WP_248766547.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QN095_RS14210 (QN095_14210) | 3013222..3013461 | + | 240 | WP_013096113.1 | YebV family protein | - |
| QN095_RS14215 (QN095_14215) | 3013495..3014139 | - | 645 | WP_045294398.1 | protein-serine/threonine phosphatase | - |
| QN095_RS14220 (QN095_14220) | 3014306..3015247 | + | 942 | WP_040019989.1 | VirK/YbjX family protein | - |
| - | 3015398..3015549 | + | 152 | - | - | Antitoxin |
| - | 3015411..3015514 | - | 104 | - | - | Toxin |
| QN095_RS14225 (QN095_14225) | 3015654..3015992 | - | 339 | WP_013096105.1 | YebY family protein | - |
| QN095_RS14230 (QN095_14230) | 3016009..3016878 | - | 870 | WP_284557208.1 | copper homeostasis membrane protein CopD | - |
| QN095_RS14235 (QN095_14235) | 3016880..3017251 | - | 372 | WP_284557209.1 | CopC domain-containing protein YobA | - |
| QN095_RS14240 (QN095_14240) | 3017389..3017619 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| QN095_RS14245 (QN095_14245) | 3017729..3018379 | + | 651 | WP_161670190.1 | carbon-nitrogen hydrolase family protein | - |
| QN095_RS14250 (QN095_14250) | 3018403..3019065 | + | 663 | WP_020690817.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282836 NZ_CP126341:c3015514-3015411 [Enterobacter cloacae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT282836 NZ_CP126341:3015398-3015549 [Enterobacter cloacae]
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAAGTTTTCCAGT
CTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAAGTTTTCCAGT
