Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1803108..1803279 | Replicon | chromosome |
| Accession | NZ_CP126339 | ||
| Organism | Atlantibacter hermannii strain TL13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1803168..1803272 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1803108..1803279 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN094_RS08210 (QN094_08210) | 1798251..1800311 | + | 2061 | WP_165432119.1 | oligopeptidase B | - |
| QN094_RS08215 (QN094_08215) | 1800308..1800976 | - | 669 | WP_002462890.1 | exodeoxyribonuclease X | - |
| QN094_RS08220 (QN094_08220) | 1801022..1801252 | - | 231 | WP_002462888.1 | DNA polymerase III subunit theta | - |
| QN094_RS08225 (QN094_08225) | 1801403..1801777 | + | 375 | WP_284556326.1 | CopC domain-containing protein YobA | - |
| QN094_RS08230 (QN094_08230) | 1801779..1802654 | + | 876 | WP_284556327.1 | copper homeostasis membrane protein CopD | - |
| QN094_RS08235 (QN094_08235) | 1802679..1803017 | + | 339 | WP_040459559.1 | YebY family protein | - |
| - | 1803108..1803279 | - | 172 | - | - | Antitoxin |
| - | 1803168..1803272 | + | 105 | - | - | Toxin |
| QN094_RS08240 (QN094_08240) | 1803785..1804429 | + | 645 | WP_284556328.1 | metallophosphoesterase | - |
| QN094_RS08245 (QN094_08245) | 1804430..1804621 | - | 192 | WP_002462879.1 | YebW family protein | - |
| QN094_RS08250 (QN094_08250) | 1804729..1804968 | - | 240 | WP_002462877.1 | YebV family protein | - |
| QN094_RS08255 (QN094_08255) | 1805083..1806519 | - | 1437 | WP_284556329.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T282823 NZ_CP126339:1803168-1803272 [Atlantibacter hermannii]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 172 bp
>AT282823 NZ_CP126339:c1803279-1803108 [Atlantibacter hermannii]
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
