Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2662037..2662175 | Replicon | chromosome |
| Accession | NZ_CP126329 | ||
| Organism | Citrobacter braakii strain THB2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2662037..2662140 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2662037..2662175 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN090_RS12965 | 2657662..2659083 | + | 1422 | WP_283204879.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QN090_RS12970 | 2659184..2659420 | + | 237 | WP_029139506.1 | YebV family protein | - |
| QN090_RS12975 | 2659523..2659714 | + | 192 | WP_049271212.1 | YebW family protein | - |
| QN090_RS12980 | 2659715..2660356 | - | 642 | WP_047358581.1 | protein-serine/threonine phosphatase | - |
| QN090_RS12985 | 2660434..2661714 | - | 1281 | WP_137367678.1 | hypothetical protein | - |
| - | 2662037..2662140 | - | 104 | - | - | Toxin |
| - | 2662037..2662175 | + | 139 | - | - | Antitoxin |
| QN090_RS12990 | 2662296..2662634 | - | 339 | WP_003833793.1 | YebY family protein | - |
| QN090_RS12995 | 2662655..2663527 | - | 873 | WP_046276427.1 | copper homeostasis membrane protein CopD | - |
| QN090_RS13000 | 2663531..2663905 | - | 375 | WP_046276426.1 | CopC domain-containing protein YobA | - |
| QN090_RS13005 | 2664049..2664279 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| QN090_RS13010 | 2664386..2665042 | + | 657 | WP_200015344.1 | carbon-nitrogen hydrolase family protein | - |
| QN090_RS13015 | 2665066..2665728 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282791 NZ_CP126329:c2662140-2662037 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 139 bp
>AT282791 NZ_CP126329:2662037-2662175 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
