Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2662037..2662175 Replicon chromosome
Accession NZ_CP126329
Organism Citrobacter braakii strain THB2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2662037..2662140 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2662037..2662175 (+)

Genomic Context

QN090_RS12965QN090_RS12970QN090_RS12975--QN090_RS13005QN090_RS13010QN090_RS13015QN090_RS12980QN090_RS12985--QN090_RS12990QN090_RS12995QN090_RS13000
Location: 2657662..2659083 (1422 bp)
Type: Others
Protein ID: WP_283204879.1
Location: 2659184..2659420 (237 bp)
Type: Others
Protein ID: WP_029139506.1
Location: 2659523..2659714 (192 bp)
Type: Others
Protein ID: WP_049271212.1
Location: 2662037..2662175 (139 bp)
Type: Antitoxin
Protein ID: -
Location: 2664049..2664279 (231 bp)
Type: Others
Protein ID: WP_003034925.1
Location: 2664386..2665042 (657 bp)
Type: Others
Protein ID: WP_200015344.1
Location: 2665066..2665728 (663 bp)
Type: Others
Protein ID: WP_016152773.1
Location: 2659715..2660356 (642 bp)
Type: Others
Protein ID: WP_047358581.1
Location: 2660434..2661714 (1281 bp)
Type: Others
Protein ID: WP_137367678.1
Location: 2662037..2662140 (104 bp)
Type: Toxin
Protein ID: -
Location: 2662296..2662634 (339 bp)
Type: Others
Protein ID: WP_003833793.1
Location: 2662655..2663527 (873 bp)
Type: Others
Protein ID: WP_046276427.1
Location: 2663531..2663905 (375 bp)
Type: Others
Protein ID: WP_046276426.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QN090_RS129652657662..2659083+1422WP_283204879.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-
QN090_RS129702659184..2659420+237WP_029139506.1YebV family protein-
QN090_RS129752659523..2659714+192WP_049271212.1YebW family protein-
QN090_RS129802659715..2660356-642WP_047358581.1protein-serine/threonine phosphatase-
QN090_RS129852660434..2661714-1281WP_137367678.1hypothetical protein-
-2662037..2662140-104--Toxin
-2662037..2662175+139--Antitoxin
QN090_RS129902662296..2662634-339WP_003833793.1YebY family protein-
QN090_RS129952662655..2663527-873WP_046276427.1copper homeostasis membrane protein CopD-
QN090_RS130002663531..2663905-375WP_046276426.1CopC domain-containing protein YobA-
QN090_RS130052664049..2664279+231WP_003034925.1DNA polymerase III subunit theta-
QN090_RS130102664386..2665042+657WP_200015344.1carbon-nitrogen hydrolase family protein-
QN090_RS130152665066..2665728+663WP_016152773.1exodeoxyribonuclease X-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T282791 NZ_CP126329:c2662140-2662037 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 139 bp

>AT282791 NZ_CP126329:2662037-2662175 [Citrobacter braakii]
AAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References