Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064631..2064776 | Replicon | chromosome |
| Accession | NZ_CP126325 | ||
| Organism | Salmonella enterica subsp. enterica strain HL21 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064671..2064774 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064631..2064776 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QN088_RS09940 | 2061057..2061755 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| QN088_RS09945 | 2061779..2062435 | - | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| QN088_RS09950 | 2062543..2062773 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| QN088_RS09955 | 2062911..2063285 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| QN088_RS09960 | 2063286..2064161 | + | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| QN088_RS09965 | 2064178..2064531 | + | 354 | WP_000722367.1 | YebY family protein | - |
| - | 2064631..2064776 | - | 146 | - | - | Antitoxin |
| - | 2064671..2064774 | + | 104 | - | - | Toxin |
| QN088_RS09970 | 2064914..2065993 | - | 1080 | WP_038803962.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| QN088_RS09975 | 2066026..2067177 | - | 1152 | Protein_1950 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| QN088_RS09980 | 2067166..2067357 | + | 192 | Protein_1951 | glycoside hydrolase family 19 protein | - |
| QN088_RS09985 | 2067411..2067944 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| QN088_RS09990 | 2068201..2068368 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| QN088_RS09995 | 2068676..2068936 | + | 261 | Protein_1954 | DUF1441 family protein | - |
| QN088_RS10000 | 2068938..2069153 | + | 216 | Protein_1955 | shikimate transporter | - |
| QN088_RS10005 | 2069151..2069495 | + | 345 | Protein_1956 | macro domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2042760..2097866 | 55106 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282772 NZ_CP126325:2064671-2064774 [Salmonella enterica subsp. enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282772 NZ_CP126325:c2064776-2064631 [Salmonella enterica subsp. enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
