Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3246539..3246628 | Replicon | chromosome |
| Accession | NZ_CP126169 | ||
| Organism | Rahnella bonaserana strain L46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3246539..3246628 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3246539..3246628 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNM34_RS14745 (QNM34_14745) | 3242213..3242683 | + | 471 | WP_284002473.1 | phage tail protein | - |
| QNM34_RS14750 (QNM34_14750) | 3242680..3243840 | + | 1161 | WP_284002475.1 | phage late control D family protein | - |
| QNM34_RS14755 (QNM34_14755) | 3244160..3244381 | + | 222 | WP_217172568.1 | DNA-binding transcriptional regulator | - |
| QNM34_RS14760 (QNM34_14760) | 3244503..3245030 | - | 528 | WP_217172569.1 | hypothetical protein | - |
| QNM34_RS14765 (QNM34_14765) | 3245414..3246469 | + | 1056 | WP_159281462.1 | tyrosine-type recombinase/integrase | - |
| - | 3246539..3246628 | - | 90 | - | - | Toxin |
| QNM34_RS14770 (QNM34_14770) | 3246784..3247119 | - | 336 | WP_217172570.1 | YebY family protein | - |
| QNM34_RS14775 (QNM34_14775) | 3247170..3248054 | - | 885 | WP_284002480.1 | copper homeostasis membrane protein CopD | - |
| QNM34_RS14780 (QNM34_14780) | 3248058..3248408 | - | 351 | WP_284006261.1 | copper homeostasis periplasmic binding protein CopC | - |
| QNM34_RS14785 (QNM34_14785) | 3248583..3249089 | - | 507 | WP_095921401.1 | non-heme ferritin | - |
| QNM34_RS14790 (QNM34_14790) | 3249495..3249725 | + | 231 | WP_152325660.1 | DNA polymerase III subunit theta | - |
| QNM34_RS14795 (QNM34_14795) | 3249745..3250701 | - | 957 | WP_217172573.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3212013..3249725 | 37712 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 90 bp
>T282727 NZ_CP126169:c3246628-3246539 [Rahnella bonaserana]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT
Antitoxin
Download Length: 90 bp
>AT282727 NZ_CP126169:3246539-3246628 [Rahnella bonaserana]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC
