Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 860178..860877 Replicon chromosome
Accession NZ_CP126169
Organism Rahnella bonaserana strain L46

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag QNM34_RS03920 Protein ID WP_217171705.1
Coordinates 860425..860877 (+) Length 151 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag QNM34_RS03915 Protein ID WP_217171728.1
Coordinates 860178..860444 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QNM34_RS03885 (QNM34_03885) 855385..855690 - 306 WP_112289780.1 YqjD family protein -
QNM34_RS03890 (QNM34_03890) 855964..857160 + 1197 WP_217171702.1 MFS transporter -
QNM34_RS03895 (QNM34_03895) 857287..857622 + 336 WP_217149125.1 DUF2002 family protein -
QNM34_RS03900 (QNM34_03900) 857677..858117 - 441 WP_120508960.1 DUF1198 domain-containing protein -
QNM34_RS03905 (QNM34_03905) 858318..858848 + 531 WP_217171703.1 class IV adenylate cyclase -
QNM34_RS03910 (QNM34_03910) 858907..859899 - 993 WP_284005084.1 tRNA-modifying protein YgfZ -
QNM34_RS03915 (QNM34_03915) 860178..860444 + 267 WP_217171728.1 FAD assembly factor SdhE Antitoxin
QNM34_RS03920 (QNM34_03920) 860425..860877 + 453 WP_217171705.1 protein YgfX Toxin
QNM34_RS03925 (QNM34_03925) 860922..861440 - 519 WP_217171706.1 flavodoxin FldB -
QNM34_RS03930 (QNM34_03930) 861551..862510 + 960 WP_217171707.1 site-specific tyrosine recombinase XerD -
QNM34_RS03935 (QNM34_03935) 862536..863255 + 720 WP_284006213.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
QNM34_RS03940 (QNM34_03940) 863262..864995 + 1734 WP_284005085.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-141)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 151 a.a.        Molecular weight: 17612.73 Da        Isoelectric Point: 10.9957

>T282721 WP_217171705.1 NZ_CP126169:860425-860877 [Rahnella bonaserana]
VALWRCDLRVSWRSQLFSLGCYGAVMLLILLAPWPAGYWPVWMTLLLLVLFECIRSQRRITARTGEIVLTDDYRLLWRGH
EWQIKHPVWMISHGALLSLRREKLKGGLAQAMRSSRQRLWLASDSMSQEEWRHLRQILLNTHPRSPAEPG

Download         Length: 453 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10395.82 Da        Isoelectric Point: 4.8382

>AT282721 WP_217171728.1 NZ_CP126169:860178-860444 [Rahnella bonaserana]
MDINNRSRVHWACRRGMRELDISIMPFFEHEYDSLSEADKEVFVRLLTCDDPDLFNWLMNHGEPDDTELQRMVALIQTRN
KARGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References