Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3343961..3344106 | Replicon | chromosome |
| Accession | NZ_CP126058 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain CS00491 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3343968..3344070 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3343961..3344106 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QM175_RS16140 | 3339494..3340927 | + | 1434 | WP_283903520.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QM175_RS16145 | 3341043..3341282 | + | 240 | WP_002911393.1 | YebV family protein | - |
| QM175_RS16150 | 3341380..3341571 | + | 192 | WP_002911395.1 | YebW family protein | - |
| QM175_RS16155 | 3341568..3342221 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| QM175_RS16160 | 3342378..3343345 | + | 968 | Protein_3150 | VirK/YbjX family protein | - |
| QM175_RS16165 | 3343450..3343593 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3343961..3344106 | + | 146 | - | - | Antitoxin |
| - | 3343968..3344070 | - | 103 | - | - | Toxin |
| QM175_RS16170 | 3344229..3344567 | - | 339 | WP_002911404.1 | YebY family protein | - |
| QM175_RS16175 | 3344584..3345453 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| QM175_RS16180 | 3345457..3345831 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QM175_RS16185 | 3345944..3346174 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QM175_RS16190 | 3346253..3346912 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| QM175_RS16195 | 3346916..3348976 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T282534 NZ_CP126058:c3344070-3343968 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282534 NZ_CP126058:3343961-3344106 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
