Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/RHH(antitoxin)
Location 2393146..2393699 Replicon chromosome
Accession NZ_CP125957
Organism Pseudomonas sp. G2-4

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QNH97_RS10870 Protein ID WP_283557464.1
Coordinates 2393445..2393699 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QNH97_RS10865 Protein ID WP_283556798.1
Coordinates 2393146..2393418 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QNH97_RS10840 (QNH97_10840) 2389486..2390739 + 1254 WP_283556796.1 OprD family porin -
QNH97_RS10845 (QNH97_10845) 2390813..2391676 - 864 WP_025214197.1 LysR family transcriptional regulator -
QNH97_RS10850 (QNH97_10850) 2391789..2392397 + 609 WP_283557463.1 LysE family translocator -
QNH97_RS10855 (QNH97_10855) 2392476..2392691 + 216 WP_283556797.1 DUF6434 domain-containing protein -
QNH97_RS10860 (QNH97_10860) 2392958..2393050 - 93 Protein_2142 hypothetical protein -
QNH97_RS10865 (QNH97_10865) 2393146..2393418 + 273 WP_283556798.1 CopG family ribbon-helix-helix protein Antitoxin
QNH97_RS10870 (QNH97_10870) 2393445..2393699 + 255 WP_283557464.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QNH97_RS10875 (QNH97_10875) 2393711..2394868 - 1158 WP_283556799.1 prolyl oligopeptidase family serine peptidase -
QNH97_RS10880 (QNH97_10880) 2395264..2397195 + 1932 WP_283556800.1 methyl-accepting chemotaxis protein -
QNH97_RS10885 (QNH97_10885) 2397220..2398131 - 912 WP_123347062.1 LysR family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-82)

Antitoxin

Ribbon-helix-helix protein, CopG

(3-40)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 9916.31 Da        Isoelectric Point: 5.7188

>T282498 WP_283557464.1 NZ_CP125957:2393445-2393699 [Pseudomonas sp. G2-4]
MERCRRFLLEKDPQVTRRAAQTIEQQLMRLETDPHVGRPYDEMPELRELVIAFGDAGYVALYRFAPTEEAVYVLAFRHQR
EAGY

Download         Length: 255 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 10556.72 Da        Isoelectric Point: 5.1815

>AT282498 WP_283556798.1 NZ_CP125957:2393146-2393418 [Pseudomonas sp. G2-4]
MATSIKIDEDLKYRIQQLASARQRSAHWIMREALSQYVVREEARESFKQEALASWKAYQETGQHLTGAETRDWLKTWGTE
EESELPTCHD

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References