Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-DinJ
Location 907576..908130 Replicon chromosome
Accession NZ_CP125946
Organism Rothia sp. SD9660Na

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QM007_RS04380 Protein ID WP_283490997.1
Coordinates 907939..908130 (+) Length 64 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QM007_RS04375 Protein ID WP_283490722.1
Coordinates 907576..907848 (+) Length 91 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QM007_RS04355 (QM007_04355) 902831..903181 + 351 WP_283490718.1 hypothetical protein -
QM007_RS04360 (QM007_04360) 903247..904305 + 1059 WP_283490719.1 3-isopropylmalate dehydrogenase -
QM007_RS04365 (QM007_04365) 904417..905514 + 1098 WP_283490720.1 branched-chain amino acid aminotransferase -
QM007_RS04370 (QM007_04370) 905611..907302 - 1692 WP_283490721.1 ABC-F family ATP-binding cassette domain-containing protein -
QM007_RS04375 (QM007_04375) 907576..907848 + 273 WP_283490722.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
QM007_RS04380 (QM007_04380) 907939..908130 + 192 WP_283490997.1 type II toxin-antitoxin system YafQ family toxin Toxin
QM007_RS04385 (QM007_04385) 908140..909807 + 1668 WP_283490723.1 pentapeptide repeat-containing protein -
QM007_RS04390 (QM007_04390) 909933..910709 + 777 WP_283490724.1 fumarylacetoacetate hydrolase family protein -
QM007_RS04395 (QM007_04395) 910759..912273 + 1515 WP_283490725.1 glutamate--tRNA ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-61)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-67)


Sequences

Toxin        


Download         Length: 64 a.a.        Molecular weight: 7057.03 Da        Isoelectric Point: 4.9260

>T282484 WP_283490997.1 NZ_CP125946:907939-908130 [Rothia sp. SD9660Na]
IVNLLATEQELPPRDRDHAPTGNFSGMRGCHIAPDWLLIYEKDDGVLALLLIRTGSHSDLFKE

Download         Length: 192 bp

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9929.16 Da        Isoelectric Point: 4.1835

>AT282484 WP_283490722.1 NZ_CP125946:907576-907848 [Rothia sp. SD9660Na]
MSTSTISVRTDSAVNGEAEELFAELGLNLSTAVNMFLRQSILERRIPFEVTTNVPTAETVASIEEGRRLLVDDRAETFES
VEALRKALDV

Download         Length: 273 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References