Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1817960..1818105 | Replicon | chromosome |
| Accession | NZ_CP125734 | ||
| Organism | Klebsiella pneumoniae strain GYB02 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1817996..1818098 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1817960..1818105 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMW18_RS08780 (QMW18_08780) | 1813090..1815150 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| QMW18_RS08785 (QMW18_08785) | 1815154..1815813 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QMW18_RS08790 (QMW18_08790) | 1815892..1816122 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QMW18_RS08795 (QMW18_08795) | 1816235..1816609 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QMW18_RS08800 (QMW18_08800) | 1816613..1817482 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| QMW18_RS08805 (QMW18_08805) | 1817499..1817837 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1817960..1818105 | - | 146 | - | - | Antitoxin |
| - | 1817996..1818098 | + | 103 | - | - | Toxin |
| QMW18_RS08810 (QMW18_08810) | 1818473..1818616 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QMW18_RS08815 (QMW18_08815) | 1818721..1819689 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QMW18_RS08820 (QMW18_08820) | 1819846..1820499 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| QMW18_RS08825 (QMW18_08825) | 1820496..1820687 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QMW18_RS08830 (QMW18_08830) | 1820785..1821024 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QMW18_RS08835 (QMW18_08835) | 1821140..1822573 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T282320 NZ_CP125734:1817996-1818098 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282320 NZ_CP125734:c1818105-1817960 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
