Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 591328..591814 Replicon chromosome
Accession NC_018526
Organism Streptococcus suis S735

Toxin (Protein)


Gene name relE Uniprot ID D5AGV2
Locus tag YYK_RS02970 Protein ID WP_011922754.1
Coordinates 591545..591814 (+) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID D5AGV1
Locus tag YYK_RS02965 Protein ID WP_002938604.1
Coordinates 591328..591555 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
YYK_RS02935 586371..586820 - 450 WP_009909619.1 MarR family transcriptional regulator -
YYK_RS09885 587114..587961 + 848 WP_087892711.1 IS630 family transposase -
YYK_RS02950 588020..588517 + 498 WP_011922751.1 DUF5590 domain-containing protein -
YYK_RS02955 588514..589695 + 1182 WP_014917225.1 pyridoxal phosphate-dependent aminotransferase -
YYK_RS02960 589710..591056 + 1347 WP_014917226.1 asparagine--tRNA ligase -
YYK_RS02965 591328..591555 + 228 WP_002938604.1 hypothetical protein Antitoxin
YYK_RS02970 591545..591814 + 270 WP_011922754.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
YYK_RS02975 592220..593539 + 1320 WP_014917227.1 MATE family efflux transporter -
YYK_RS02980 593590..593967 + 378 WP_002937263.1 RidA family protein -
YYK_RS02985 593989..594876 + 888 WP_011922160.1 RNase adapter RapZ -
YYK_RS02990 594873..595847 + 975 WP_002937257.1 YvcK family protein -
YYK_RS02995 595844..596761 + 918 WP_002937252.1 DNA-binding protein WhiA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-87)

Antitoxin

Protein of unknown function DUF6290

(1-71)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10437.49 Da        Isoelectric Point: 10.3916

>T28231 WP_011922754.1 NC_018526:591545-591814 [Streptococcus suis S735]
MAYKLVLSDDALKQLKKMDRHVGMMLAKDLKKRLDGLENPRQFGKALVGDYKGLWRYRVGNYRVICDIIDNKMVILALEI
GHRKEIYKK

Download         Length: 270 bp

>T28231 NC_018526:591545-591814 [Streptococcus suis S735]
ATGGCTTATAAGCTTGTTCTCAGCGATGATGCTTTGAAGCAGTTGAAAAAAATGGACAGGCATGTGGGGATGATGCTTGC
TAAGGATTTGAAAAAACGTTTGGACGGTTTGGAGAATCCAAGACAATTTGGGAAGGCCTTGGTAGGAGACTATAAGGGGC
TGTGGCGGTATAGAGTGGGGAATTACCGTGTAATTTGTGATATTATTGATAACAAAATGGTCATCCTGGCCCTTGAAATC
GGGCACCGGAAAGAAATCTATAAAAAATGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8450.51 Da        Isoelectric Point: 4.1589

>AT28231 WP_002938604.1 NC_018526:591328-591555 [Streptococcus suis S735]
MGIVSLRLNDAEEEIFRSYAIHTGKSLSELFKTALAEQIEDQLDYEIGIKALKKFQENPVTHSIDDVLAELEDGL

Download         Length: 228 bp

>AT28231 NC_018526:591328-591555 [Streptococcus suis S735]
ATGGGAATTGTATCCTTGCGATTAAACGATGCAGAAGAAGAAATTTTCAGAAGCTATGCTATTCATACAGGAAAAAGCCT
GTCTGAGCTATTCAAAACTGCACTTGCTGAACAGATAGAAGACCAGTTGGACTATGAAATTGGTATCAAGGCTTTGAAGA
AATTCCAAGAAAATCCTGTTACACACTCGATTGATGATGTTCTTGCGGAGTTAGAAGATGGCTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A126UKS2

Antitoxin

Source ID Structure
AlphaFold DB A0A140EXF0

References