Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 171150..171779 Replicon chromosome
Accession NZ_CP125669
Organism Acinetobacter sp. KCTC 92772

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QLH32_RS00785 Protein ID WP_283267604.1
Coordinates 171378..171779 (+) Length 134 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QLH32_RS00780 Protein ID WP_283267603.1
Coordinates 171150..171377 (+) Length 76 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QLH32_RS00770 (QLH32_00770) 166629..169760 - 3132 WP_283267601.1 efflux RND transporter permease subunit -
QLH32_RS00775 (QLH32_00775) 169762..170949 - 1188 WP_283267602.1 efflux RND transporter periplasmic adaptor subunit -
QLH32_RS00780 (QLH32_00780) 171150..171377 + 228 WP_283267603.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
QLH32_RS00785 (QLH32_00785) 171378..171779 + 402 WP_283267604.1 type II toxin-antitoxin system VapC family toxin Toxin
QLH32_RS00790 (QLH32_00790) 171821..172990 - 1170 WP_283267605.1 succinyldiaminopimelate transaminase -
QLH32_RS00795 (QLH32_00795) 173054..175717 - 2664 WP_283267606.1 [protein-PII] uridylyltransferase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-124)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 134 a.a.        Molecular weight: 15039.43 Da        Isoelectric Point: 8.7793

>T282270 WP_283267604.1 NZ_CP125669:171378-171779 [Acinetobacter sp. KCTC 92772]
MLKYMLDTNIVIYVIKQKPPQVRTKFNSVATQLCVSSVTVAELIYGAENSQYPEKNLYIVENFLSRLQILDYGLEAAIQY
GNIKAILRKTGQLISDNDLHIAAHARSKGLILVTNNTKEFERVPALQLENWVG

Download         Length: 402 bp


Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8882.87 Da        Isoelectric Point: 4.3308

>AT282270 WP_283267603.1 NZ_CP125669:171150-171377 [Acinetobacter sp. KCTC 92772]
MITSIFMNNRTQAVRLPSVYRFSEQTQKVFVRQMGVERVISQVDQVWDSFFDNPDLTVSDDFERGEQLNSERESF

Download         Length: 228 bp


Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References