Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/StbC(antitoxin)
Location 43213..43619 Replicon chromosome
Accession NZ_CP125656
Organism Xanthomonas campestris strain GBBC 3139

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QMY62_RS00190 Protein ID WP_267129426.1
Coordinates 43464..43619 (+) Length 52 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QMY62_RS00185 Protein ID WP_070694028.1
Coordinates 43213..43467 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMY62_RS00160 (QMY62_00160) 38490..39755 + 1266 WP_070694019.1 phospholipase D-like domain-containing protein -
QMY62_RS00165 (QMY62_00165) 39787..40260 - 474 WP_283268268.1 hypothetical protein -
QMY62_RS00170 (QMY62_00170) 40347..41449 + 1103 WP_283267164.1 IS3-like element IS1404 family transposase -
QMY62_RS00175 (QMY62_00175) 41766..41972 + 207 WP_014509615.1 hypothetical protein -
QMY62_RS00180 (QMY62_00180) 41959..43074 + 1116 WP_070694026.1 type II toxin-antitoxin system RelE/ParE family toxin -
QMY62_RS00185 (QMY62_00185) 43213..43467 + 255 WP_070694028.1 Arc family DNA-binding protein Antitoxin
QMY62_RS00190 (QMY62_00190) 43464..43619 + 156 WP_267129426.1 hypothetical protein Toxin
QMY62_RS00195 (QMY62_00195) 43674..44084 - 411 WP_283268271.1 hypothetical protein -
QMY62_RS00205 (QMY62_00205) 46462..46620 - 159 WP_164493569.1 hypothetical protein -
QMY62_RS00210 (QMY62_00210) 46823..47170 - 348 WP_076038022.1 helix-turn-helix domain-containing protein -
QMY62_RS00215 (QMY62_00215) 47261..47587 + 327 WP_076038023.1 nuclear transport factor 2 family protein -
QMY62_RS00220 (QMY62_00220) 47776..48375 + 600 WP_076038018.1 NAD(P)H-dependent oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside IScluster/Tn - - 40347..45521 5174


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Arc-like DNA binding domain

(1-39)


Sequences

Toxin        


Download         Length: 52 a.a.        Molecular weight: 5681.63 Da        Isoelectric Point: 4.3220

>T282243 WP_267129426.1 NZ_CP125656:43464-43619 [Xanthomonas campestris]
VTLLDTNVIFGPNLHVVAWIDVQAVETLFLSVVTVAELRSGDIQDFRPLMK

Download         Length: 156 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9028.44 Da        Isoelectric Point: 10.3861

>AT282243 WP_070694028.1 NZ_CP125656:43213-43467 [Xanthomonas campestris]
MPSFTVRNIPEDVHRAIWARAAQHGRSTEAEIRAILESAAKPADQVKLGALLVDIGRDAGLTAKEADAFAKLRDKAAIKP
IGLK

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References