Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 2890064..2890722 Replicon chromosome
Accession NZ_CP125652
Organism Rhizobium sp. BT04

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QMO82_RS22475 Protein ID WP_183608479.1
Coordinates 2890306..2890722 (+) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QMO82_RS22470 Protein ID WP_183608480.1
Coordinates 2890064..2890306 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO82_RS22445 2885493..2886476 - 984 WP_183608485.1 UDP-glucose 4-epimerase GalE -
QMO82_RS22450 2886698..2887342 + 645 WP_183608484.1 ThuA domain-containing protein -
QMO82_RS22455 2887401..2887970 + 570 WP_183608483.1 GNAT family N-acetyltransferase -
QMO82_RS22460 2888005..2888256 - 252 WP_183608482.1 DUF2934 domain-containing protein -
QMO82_RS22465 2888458..2889894 + 1437 WP_183608481.1 hypothetical protein -
QMO82_RS22470 2890064..2890306 + 243 WP_183608480.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
QMO82_RS22475 2890306..2890722 + 417 WP_183608479.1 type II toxin-antitoxin system VapC family toxin Toxin
QMO82_RS22485 2891196..2891513 + 318 WP_003543907.1 50S ribosomal protein L21 -
QMO82_RS22490 2891548..2891817 + 270 WP_003567620.1 50S ribosomal protein L27 -
QMO82_RS22495 2891943..2892599 + 657 WP_183608478.1 GNAT family protein -
QMO82_RS22500 2892596..2893183 + 588 WP_183608477.1 GNAT family N-acetyltransferase -
QMO82_RS22505 2893221..2894087 - 867 WP_283196550.1 endonuclease/exonuclease/phosphatase family protein -
QMO82_RS22510 2894172..2895254 + 1083 WP_183608475.1 GTPase ObgE -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-127)

Antitoxin

SpoVT-AbrB domain

(8-44)


Sequences

Toxin        


Download         Length: 139 a.a.        Molecular weight: 14895.87 Da        Isoelectric Point: 6.6455

>T282237 WP_183608479.1 NZ_CP125652:2890306-2890722 [Rhizobium sp. BT04]
MIHLDTNVAVALLNGRPRQVRERFDEARNAGTPLGLSIIVYHELMYGAAASERRHANEEKIALFIASGGISLIDFNEGDA
QEAADIRAHLRRQGTPIGPYDVLIAAHARRAGTVLVTANTGEFARVPGLQVLDWAAAS

Download         Length: 417 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8957.24 Da        Isoelectric Point: 7.0138

>AT282237 WP_183608480.1 NZ_CP125652:2890064-2890306 [Rhizobium sp. BT04]
MSATAKLFTHGRSQAVRLPKEFRFEGKEVRVSRVGNRVILEPLDADNAMPWAAIDKLGDTPFMPEGREQPSMPADRAVFD

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References