Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 542954..543621 Replicon plasmid pRspBT04f
Accession NZ_CP125651
Organism Rhizobium sp. BT04

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QMO82_RS07750 Protein ID WP_183609707.1
Coordinates 542954..543364 (-) Length 137 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QMO82_RS07755 Protein ID WP_183609706.1
Coordinates 543361..543621 (-) Length 87 a.a.

Genomic Context

QMO82_RS07730QMO82_RS07735QMO82_RS07745QMO82_RS07770QMO82_RS07775QMO82_RS07780QMO82_RS07740QMO82_RS07750QMO82_RS07755QMO82_RS07760QMO82_RS07765QMO82_RS07785
Location: 538154..538975 (822 bp)
Type: Others
Protein ID: WP_183609711.1
Location: 539075..539491 (417 bp)
Type: Others
Protein ID: WP_183610957.1
Location: 540700..542889 (2190 bp)
Type: Others
Protein ID: WP_183609708.1
Location: 544800..545042 (243 bp)
Type: Others
Protein ID: Protein_484
Location: 545227..545853 (627 bp)
Type: Others
Protein ID: WP_283196508.1
Location: 545856..546322 (467 bp)
Type: Others
Protein ID: Protein_486
Location: 539638..540555 (918 bp)
Type: Others
Protein ID: WP_183609709.1
Location: 542954..543364 (411 bp)
Type: Toxin
Protein ID: WP_183609707.1
Location: 543361..543621 (261 bp)
Type: Antitoxin
Protein ID: WP_183609706.1
Location: 543743..544300 (558 bp)
Type: Others
Protein ID: WP_183609705.1
Location: 544511..544879 (369 bp)
Type: Others
Protein ID: WP_277545296.1
Location: 546334..547479 (1146 bp)
Type: Others
Protein ID: WP_183609703.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
QMO82_RS07730538154..538975+822WP_183609711.13-methyl-2-oxobutanoate hydroxymethyltransferase-
QMO82_RS07735539075..539491+417WP_183610957.1hypothetical protein-
QMO82_RS07740539638..540555-918WP_183609709.1hydrogen peroxide-inducible genes activator-
QMO82_RS07745540700..542889+2190WP_183609708.1catalase/peroxidase HPI-
QMO82_RS07750542954..543364-411WP_183609707.1type II toxin-antitoxin system VapC family toxinToxin
QMO82_RS07755543361..543621-261WP_183609706.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
QMO82_RS07760543743..544300-558WP_183609705.1DUF3299 domain-containing protein-
QMO82_RS07765544511..544879-369WP_277545296.1SgcJ/EcaC family oxidoreductase-
QMO82_RS07770544800..545042+243Protein_484hypothetical protein-
QMO82_RS07775545227..545853+627WP_283196508.1HAMP domain-containing sensor histidine kinase-
QMO82_RS07780545856..546322+467Protein_486response regulator-
QMO82_RS07785546334..547479-1146WP_183609703.1ROK family transcriptional regulator-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid-gmd1..659089659089


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-126)

Antitoxin

SpoVT-AbrB domain

(8-44)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 14967.23 Da        Isoelectric Point: 6.4758

>T282235 WP_183609707.1 NZ_CP125651:c543364-542954 [Rhizobium sp. BT04]
VITHLIDTNAVIALIGRKSETLLKRVIDNDEGSIGLSTVVMHELYYGAYKSAKISYNLETLRLFMAEFSVIGFEQEDALA
AGKIRAALATKGTPIGPYDVLIAAQARTRDLVLVTNNVGEFRRVDGLRVEDWTVGR

Download         Length: 411 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9917.05 Da        Isoelectric Point: 4.8723

>AT282235 WP_183609706.1 NZ_CP125651:c543621-543361 [Rhizobium sp. BT04]
MPQYARVFQSGNSQAVRLPKEFRFDVDQVEVTREGDAVILRPRAERGVRWASLHSALERGLSDDFMAEGREQPEGQERPD
LQDLFK

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References