Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 78483..79039 Replicon plasmid pRspBT04c
Accession NZ_CP125647
Organism Rhizobium sp. BT04

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QMO82_RS00440 Protein ID WP_183610274.1
Coordinates 78749..79039 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QMO82_RS00435 Protein ID WP_183610273.1
Coordinates 78483..78761 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO82_RS00415 (QMO82_000286) 73761..74648 - 888 WP_183610269.1 sugar ABC transporter permease -
QMO82_RS00420 (QMO82_000287) 74740..75969 - 1230 WP_183610270.1 ABC transporter substrate-binding protein -
QMO82_RS00425 (QMO82_000288) 76027..76980 - 954 WP_183610271.1 sugar phosphate isomerase/epimerase -
QMO82_RS00430 (QMO82_000289) 77204..78274 + 1071 WP_183610272.1 LacI family DNA-binding transcriptional regulator -
QMO82_RS00435 (QMO82_000290) 78483..78761 + 279 WP_183610273.1 CopG family ribbon-helix-helix protein Antitoxin
QMO82_RS00440 (QMO82_000291) 78749..79039 + 291 WP_183610274.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QMO82_RS00445 (QMO82_000292) 79203..79634 + 432 WP_183610275.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit -
QMO82_RS00450 (QMO82_000293) 79634..81028 + 1395 WP_183610276.1 acetyl-CoA carboxylase biotin carboxylase subunit -
QMO82_RS00455 (QMO82_000294) 81025..81447 + 423 WP_183610277.1 acetyl-CoA carboxylase -
QMO82_RS00460 (QMO82_000295) 81444..82151 + 708 WP_183610278.1 5-oxoprolinase subunit PxpB -
QMO82_RS00465 (QMO82_000296) 82148..83143 + 996 WP_183610279.1 biotin-dependent carboxyltransferase family protein -
QMO82_RS00470 (QMO82_000297) 83165..83932 + 768 WP_183610280.1 5-oxoprolinase subunit PxpA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..274203 274203


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10851.61 Da        Isoelectric Point: 9.6552

>T282234 WP_183610274.1 NZ_CP125647:78749-79039 [Rhizobium sp. BT04]
MLQVVFSPAAIRDLERLREFLRLKNPSAAKRAAETILNGLRVLGAHPHIGRLIEDLPEQYRELLIDFGDSGYVARYRIDG
AILTILAVRHQKEAGF

Download         Length: 291 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10692.96 Da        Isoelectric Point: 4.9602

>AT282234 WP_183610273.1 NZ_CP125647:78483-78761 [Rhizobium sp. BT04]
MASPTSLKLDDELKGRVQQLAEARRRSSHWIMREAIAQYVEREEKREALRQETLDAWNEFKATGLHVTGAEVEKWLSTWG
TDEELSAPECYK

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References