Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-StbC
Location 403503..404179 Replicon plasmid pRspBT03f
Accession NZ_CP125641
Organism Rhizobium sp. BT03

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QMO80_RS23700 Protein ID WP_283200327.1
Coordinates 403754..404179 (+) Length 142 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QMO80_RS23695 Protein ID WP_283200326.1
Coordinates 403503..403757 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO80_RS23675 (QMO80_004736) 400305..401144 + 840 WP_049734897.1 transporter substrate-binding domain-containing protein -
QMO80_RS23680 (QMO80_004737) 401276..401938 + 663 WP_283200323.1 amino acid ABC transporter permease -
QMO80_RS23685 (QMO80_004738) 401944..402603 + 660 WP_283200324.1 amino acid ABC transporter permease -
QMO80_RS23690 (QMO80_004739) 402614..403384 + 771 WP_283200325.1 amino acid ABC transporter ATP-binding protein -
QMO80_RS23695 (QMO80_004740) 403503..403757 + 255 WP_283200326.1 plasmid stabilization protein Antitoxin
QMO80_RS23700 (QMO80_004741) 403754..404179 + 426 WP_283200327.1 type II toxin-antitoxin system VapC family toxin Toxin
QMO80_RS23705 (QMO80_004742) 404378..405121 + 744 WP_283200793.1 GntR family transcriptional regulator -
QMO80_RS23710 (QMO80_004743) 405125..405910 + 786 WP_283200328.1 transporter substrate-binding domain-containing protein -
QMO80_RS23715 (QMO80_004744) 405986..406657 + 672 WP_283200329.1 amino acid ABC transporter permease -
QMO80_RS23720 (QMO80_004745) 406654..407313 + 660 WP_283200330.1 amino acid ABC transporter permease -
QMO80_RS23725 (QMO80_004746) 407291..408016 + 726 WP_283200331.1 amino acid ABC transporter ATP-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..654550 654550


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-123)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 142 a.a.        Molecular weight: 14987.10 Da        Isoelectric Point: 4.4851

>T282231 WP_283200327.1 NZ_CP125641:403754-404179 [Rhizobium sp. BT03]
MIILDTNVVSEAMKPAPDDAVKFWLDEQAAETLFLSSVTIAELMFGIGALPAGKRKERLSDALDGLEELFEGRILAFDIT
AARHYADLAVKARAAGRGFPTPDGYIAAIAASKGFVVATRDTSAFDAAGVEVINPWATSRA

Download         Length: 426 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9322.70 Da        Isoelectric Point: 8.9520

>AT282231 WP_283200326.1 NZ_CP125641:403503-403757 [Rhizobium sp. BT03]
MPAVTIRNLSEATHRALKVRAAHHGRSAEAEMREILEAAVRPETRLRLGSALAERSRLLGLTNDDFAVLDQAFDKIPAKP
MSFE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References