282229

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 3833469..3834049 Replicon chromosome
Accession NZ_CP125640
Organism Rhizobium sp. BT03

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QMO80_RS18610 Protein ID WP_283197833.1
Coordinates 3833666..3834049 (+) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QMO80_RS18605 Protein ID WP_283197832.1
Coordinates 3833469..3833669 (+) Length 67 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO80_RS18595 (QMO80_003719) 3829817..3831556 + 1740 WP_283197830.1 L-arabinonate dehydratase -
QMO80_RS18600 (QMO80_003720) 3831801..3833138 - 1338 WP_283197831.1 pilus assembly protein -
QMO80_RS18605 (QMO80_003721) 3833469..3833669 + 201 WP_283197832.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
QMO80_RS18610 (QMO80_003722) 3833666..3834049 + 384 WP_283197833.1 type II toxin-antitoxin system VapC family toxin Toxin
QMO80_RS18615 (QMO80_003723) 3834123..3834371 - 249 WP_283197834.1 hypothetical protein -
QMO80_RS18620 (QMO80_003724) 3834382..3834948 - 567 WP_283197835.1 hypothetical protein -
QMO80_RS18625 (QMO80_003725) 3835109..3835780 - 672 Protein_3664 APC family permease -
QMO80_RS18630 (QMO80_003726) 3835779..3836663 + 885 WP_283197836.1 MurR/RpiR family transcriptional regulator -
QMO80_RS18635 (QMO80_003727) 3836838..3837599 - 762 WP_283197837.1 DMT family transporter -
QMO80_RS18640 (QMO80_003728) 3837659..3838636 + 978 WP_283197838.1 AraC family transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-113)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(1-42)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14311.60 Da        Isoelectric Point: 8.1328

>T282229 WP_283197833.1 NZ_CP125640:3833666-3834049 [Rhizobium sp. BT03]
VILADTSIWIDHFRHADAELRRIIEDDRLLCHPSVIGELALGSLRDRDRVMAFLAAQRGAVVATHDEVMTMINRYGIFSM
GIGYTDAHLLASVLLERRATLWTRDKRLRLAAEKAGVSLHIPVNTPR

Download         Length: 384 bp

Antitoxin


Download         Length: 67 a.a.        Molecular weight: 7092.27 Da        Isoelectric Point: 11.1107

>AT282229 WP_283197832.1 NZ_CP125640:3833469-3833669 [Rhizobium sp. BT03]
MRSTINLDDALMDRAKSLTGIKETAALVRQALETLVRVESGKRLIALGGTMPDAEAAPRRRSAAVK

Download         Length: 201 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References