Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 2827148..2827689 Replicon chromosome
Accession NZ_CP125640
Organism Rhizobium sp. BT03

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QMO80_RS13835 Protein ID WP_283197092.1
Coordinates 2827148..2827444 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QMO80_RS13840 Protein ID WP_283197093.1
Coordinates 2827441..2827689 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO80_RS13815 (QMO80_002763) 2823301..2823828 + 528 WP_283197088.1 MarR family winged helix-turn-helix transcriptional regulator -
QMO80_RS13820 (QMO80_002764) 2823890..2824546 + 657 WP_283197089.1 thiamine diphosphokinase -
QMO80_RS13825 (QMO80_002765) 2824550..2826370 + 1821 WP_283197090.1 ABC-F family ATP-binding cassette domain-containing protein -
QMO80_RS13830 (QMO80_002766) 2826489..2827118 + 630 WP_283197091.1 hypothetical protein -
QMO80_RS13835 (QMO80_002767) 2827148..2827444 - 297 WP_283197092.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QMO80_RS13840 (QMO80_002768) 2827441..2827689 - 249 WP_283197093.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QMO80_RS13845 (QMO80_002769) 2827809..2829671 - 1863 WP_283197094.1 ABC transporter ATP-binding protein/permease -
QMO80_RS13850 (QMO80_002770) 2829954..2830877 + 924 WP_283197095.1 homoserine O-succinyltransferase -
QMO80_RS13855 (QMO80_002771) 2830971..2831993 + 1023 WP_283197096.1 aldose epimerase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2827148..2838802 11654


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-91)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11620.21 Da        Isoelectric Point: 5.9705

>T282228 WP_283197092.1 NZ_CP125640:c2827444-2827148 [Rhizobium sp. BT03]
MKYRTTVEADYDIVDIYVLGANQFGLPQSERYVDDLFRAFELLADNPQMARERRELNPPIRLHPHHAHMIAYVIREEDIL
IVRVLHGRENWQSLFAQS

Download         Length: 297 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9466.65 Da        Isoelectric Point: 6.3447

>AT282228 WP_283197093.1 NZ_CP125640:c2827689-2827441 [Rhizobium sp. BT03]
MATMNVSLPDPMKEWVDSQTKTGRYSNASDYVRDLIRRDQERSDKLVELQRLITDGLESGLSDRSKDDILQVARERLAAR
RV

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References