282227

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 1565437..1565914 Replicon chromosome
Accession NZ_CP125640
Organism Rhizobium sp. BT03

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag QMO80_RS07795 Protein ID WP_085736488.1
Coordinates 1565437..1565706 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag QMO80_RS07800 Protein ID WP_283199561.1
Coordinates 1565690..1565914 (-) Length 75 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QMO80_RS07785 (QMO80_001557) 1560944..1564405 - 3462 WP_283199560.1 chromosome segregation SMC family protein -
QMO80_RS07790 (QMO80_001558) 1564511..1565287 - 777 WP_183852393.1 DsbA family protein -
QMO80_RS07795 (QMO80_001559) 1565437..1565706 - 270 WP_085736488.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QMO80_RS07800 (QMO80_001560) 1565690..1565914 - 225 WP_283199561.1 DUF6290 family protein Antitoxin
QMO80_RS07805 (QMO80_001561) 1566315..1567316 - 1002 WP_283199562.1 substrate-binding domain-containing protein -
QMO80_RS07810 (QMO80_001562) 1567343..1568278 - 936 WP_283199563.1 ABC transporter permease -
QMO80_RS07815 (QMO80_001563) 1568292..1569779 - 1488 WP_283199564.1 sugar ABC transporter ATP-binding protein -
QMO80_RS07820 (QMO80_001564) 1569781..1570785 - 1005 WP_283199565.1 LacI family DNA-binding transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-88)

Antitoxin

Relaxosome protein TraY

(4-49)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10442.95 Da        Isoelectric Point: 10.4069

>T282227 WP_085736488.1 NZ_CP125640:c1565706-1565437 [Rhizobium sp. BT03]
MAWRIEFQRAAERELEKLGHEAARRILRFLNDRVARLDDPRSIGEALKGSELGDFWKYRVGDYRVIASIDDGAVRILVVR
IGNRRDVYR

Download         Length: 270 bp

Antitoxin


Download         Length: 75 a.a.        Molecular weight: 8577.73 Da        Isoelectric Point: 4.6909

>AT282227 WP_283199561.1 NZ_CP125640:c1565914-1565690 [Rhizobium sp. BT03]
MLALRLPPEIEARLDELSKRTGRSKSFYARQAILEHLDDLEDVYLAEKRLEELRRGEGDTVSLAELMTRYGVEN

Download         Length: 225 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References