282157

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 1149108..1149613 Replicon chromosome
Accession NZ_CP125619
Organism Pseudomonas sp. PMCC200367

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QFX16_RS05040 Protein ID WP_283183065.1
Coordinates 1149108..1149362 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QFX16_RS05045 Protein ID WP_134096615.1
Coordinates 1149359..1149613 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QFX16_RS05020 1145100..1145807 + 708 WP_283183061.1 peptide-methionine (S)-S-oxide reductase MsrA -
QFX16_RS05025 1145827..1146840 - 1014 WP_283183062.1 diguanylate cyclase -
QFX16_RS05030 1146916..1147821 - 906 WP_283183063.1 LysR family transcriptional regulator -
QFX16_RS05035 1147924..1149099 + 1176 WP_283183064.1 aspartate aminotransferase family protein -
QFX16_RS05040 1149108..1149362 - 255 WP_283183065.1 Txe/YoeB family addiction module toxin Toxin
QFX16_RS05045 1149359..1149613 - 255 WP_134096615.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QFX16_RS05050 1149871..1150308 - 438 WP_283183066.1 VOC family protein -
QFX16_RS05055 1150334..1150837 - 504 WP_283183067.1 adenylate kinase -
QFX16_RS05060 1150905..1152827 - 1923 WP_283183068.1 alkaline phosphatase D family protein -
QFX16_RS05065 1152906..1153169 - 264 WP_283183069.1 hypothetical protein -
QFX16_RS05070 1153159..1153950 - 792 WP_283183070.1 VacJ family lipoprotein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10077.54 Da        Isoelectric Point: 7.1631

>T282157 WP_283183065.1 NZ_CP125619:c1149362-1149108 [Pseudomonas sp. PMCC200367]
MNIEFTPEGWEDYLWFQQNDKAGLKRINLLIKSIQREPFDGLGKPEPLKYNLSGFWSRRITAEHRLVYAVEDGEIRVVMC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9502.91 Da        Isoelectric Point: 8.5163

>AT282157 WP_134096615.1 NZ_CP125619:c1149613-1149359 [Pseudomonas sp. PMCC200367]
MQTINYTTARAHLAETMDRVNEDRAPLLVTRQKGEPVVMMSLAEYNALEETAYLLRSPANAERLIKSIGNLRAGKTKTRQ
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References