Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 325509..326146 Replicon chromosome
Accession NZ_CP125619
Organism Pseudomonas sp. PMCC200367

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QFX16_RS01505 Protein ID WP_283182550.1
Coordinates 325509..325916 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QFX16_RS01510 Protein ID WP_033058311.1
Coordinates 325916..326146 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QFX16_RS01485 321170..321865 - 696 WP_149416717.1 ABC transporter permease -
QFX16_RS01490 321944..322690 - 747 WP_095127574.1 ABC transporter substrate-binding protein -
QFX16_RS01495 322704..323477 - 774 WP_007897462.1 ABC transporter ATP-binding protein -
QFX16_RS01500 324041..325432 + 1392 WP_283182549.1 GABA permease -
QFX16_RS01505 325509..325916 - 408 WP_283182550.1 tRNA(fMet)-specific endonuclease VapC Toxin
QFX16_RS01510 325916..326146 - 231 WP_033058311.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
QFX16_RS01515 326335..326787 - 453 WP_283182551.1 hypothetical protein -
QFX16_RS01520 326794..327210 - 417 WP_283182552.1 hypothetical protein -
QFX16_RS01525 327248..328222 - 975 WP_283182553.1 alpha/beta fold hydrolase -
QFX16_RS01530 328271..329347 - 1077 WP_283182554.1 PDDEXK nuclease domain-containing protein -
QFX16_RS01535 329610..330056 + 447 WP_283182555.1 carboxypeptidase regulatory-like domain-containing protein -
QFX16_RS01540 330131..330421 + 291 WP_283182556.1 YceK/YidQ family lipoprotein -
QFX16_RS01550 330760..331032 - 273 WP_283182557.1 oxidative damage protection protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-124)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 15152.46 Da        Isoelectric Point: 6.6377

>T282155 WP_283182550.1 NZ_CP125619:c325916-325509 [Pseudomonas sp. PMCC200367]
MIKYMLDTNICIFTIKNKPQIVREAFNRHNGQLCISAVTLMELFYGAEKSAAPEKNLAVIEGFVARLEVLPFDNEAAAHT
GMIRSELAKDGTPIGPYDHMIAGHARSRGFIVVTNNLREFDRVPGLRVEDWVHPD

Download         Length: 408 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8576.57 Da        Isoelectric Point: 4.3569

>AT282155 WP_033058311.1 NZ_CP125619:c326146-325916 [Pseudomonas sp. PMCC200367]
MEQTTLFMSNRSQAVRLPKAVAMPSDVKRVNVVAIGRARIITPADETWDSWFDGDGVSADFMTDREQPADQERESF

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References