Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relE-yefM/YoeB-YefM |
Location | 1150479..1150984 | Replicon | chromosome |
Accession | NZ_CP125618 | ||
Organism | Pseudomonas sp. PMCC200344 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | QFW87_RS05075 | Protein ID | WP_283189962.1 |
Coordinates | 1150479..1150733 (-) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | - |
Locus tag | QFW87_RS05080 | Protein ID | WP_134096615.1 |
Coordinates | 1150730..1150984 (-) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
QFW87_RS05050 | 1146077..1146784 | + | 708 | WP_283189957.1 | peptide-methionine (S)-S-oxide reductase MsrA | - |
QFW87_RS05055 | 1146797..1147201 | - | 405 | WP_283189958.1 | GNAT family N-acetyltransferase | - |
QFW87_RS05060 | 1147198..1148211 | - | 1014 | WP_283189959.1 | diguanylate cyclase | - |
QFW87_RS05065 | 1148287..1149192 | - | 906 | WP_283189960.1 | LysR family transcriptional regulator | - |
QFW87_RS05070 | 1149295..1150470 | + | 1176 | WP_283189961.1 | aspartate aminotransferase family protein | - |
QFW87_RS05075 | 1150479..1150733 | - | 255 | WP_283189962.1 | Txe/YoeB family addiction module toxin | Toxin |
QFW87_RS05080 | 1150730..1150984 | - | 255 | WP_134096615.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
QFW87_RS05085 | 1151242..1151679 | - | 438 | WP_283189963.1 | VOC family protein | - |
QFW87_RS05090 | 1151705..1152208 | - | 504 | WP_283189964.1 | adenylate kinase | - |
QFW87_RS05095 | 1152276..1154198 | - | 1923 | WP_283189965.1 | alkaline phosphatase D family protein | - |
QFW87_RS05100 | 1154277..1154540 | - | 264 | WP_283183069.1 | hypothetical protein | - |
QFW87_RS05105 | 1154530..1155216 | - | 687 | WP_283189966.1 | VacJ family lipoprotein | - |
QFW87_RS05110 | 1155235..1155657 | + | 423 | Protein_1001 | response regulator transcription factor | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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