Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-YefM
Location 1150479..1150984 Replicon chromosome
Accession NZ_CP125618
Organism Pseudomonas sp. PMCC200344

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QFW87_RS05075 Protein ID WP_283189962.1
Coordinates 1150479..1150733 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag QFW87_RS05080 Protein ID WP_134096615.1
Coordinates 1150730..1150984 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QFW87_RS05050 1146077..1146784 + 708 WP_283189957.1 peptide-methionine (S)-S-oxide reductase MsrA -
QFW87_RS05055 1146797..1147201 - 405 WP_283189958.1 GNAT family N-acetyltransferase -
QFW87_RS05060 1147198..1148211 - 1014 WP_283189959.1 diguanylate cyclase -
QFW87_RS05065 1148287..1149192 - 906 WP_283189960.1 LysR family transcriptional regulator -
QFW87_RS05070 1149295..1150470 + 1176 WP_283189961.1 aspartate aminotransferase family protein -
QFW87_RS05075 1150479..1150733 - 255 WP_283189962.1 Txe/YoeB family addiction module toxin Toxin
QFW87_RS05080 1150730..1150984 - 255 WP_134096615.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
QFW87_RS05085 1151242..1151679 - 438 WP_283189963.1 VOC family protein -
QFW87_RS05090 1151705..1152208 - 504 WP_283189964.1 adenylate kinase -
QFW87_RS05095 1152276..1154198 - 1923 WP_283189965.1 alkaline phosphatase D family protein -
QFW87_RS05100 1154277..1154540 - 264 WP_283183069.1 hypothetical protein -
QFW87_RS05105 1154530..1155216 - 687 WP_283189966.1 VacJ family lipoprotein -
QFW87_RS05110 1155235..1155657 + 423 Protein_1001 response regulator transcription factor -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-71)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10063.47 Da        Isoelectric Point: 6.4594

>T282149 WP_283189962.1 NZ_CP125618:c1150733-1150479 [Pseudomonas sp. PMCC200344]
MNIEFTPEGWEDYLWFQQNDNAGLKRINLLIKSIQREPFDGLGKPEPLKYNLSGFWSRRITAEHRLVYAVEDGEIRVVMC
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9502.91 Da        Isoelectric Point: 8.5163

>AT282149 WP_134096615.1 NZ_CP125618:c1150984-1150730 [Pseudomonas sp. PMCC200344]
MQTINYTTARAHLAETMDRVNEDRAPLLVTRQKGEPVVMMSLAEYNALEETAYLLRSPANAERLIKSIGNLRAGKTKTRQ
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References