Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 329450..330087 Replicon chromosome
Accession NZ_CP125618
Organism Pseudomonas sp. PMCC200344

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag QFW87_RS01525 Protein ID WP_283189655.1
Coordinates 329450..329857 (-) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag QFW87_RS01530 Protein ID WP_283189656.1
Coordinates 329857..330087 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QFW87_RS01505 325112..325807 - 696 WP_149416717.1 ABC transporter permease -
QFW87_RS01510 325886..326632 - 747 WP_095127574.1 ABC transporter substrate-binding protein -
QFW87_RS01515 326646..327419 - 774 WP_007897462.1 ABC transporter ATP-binding protein -
QFW87_RS01520 327983..329374 + 1392 WP_283189654.1 GABA permease -
QFW87_RS01525 329450..329857 - 408 WP_283189655.1 tRNA(fMet)-specific endonuclease VapC Toxin
QFW87_RS01530 329857..330087 - 231 WP_283189656.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
QFW87_RS01535 330276..330728 - 453 WP_283189657.1 hypothetical protein -
QFW87_RS01540 330735..331151 - 417 WP_283182552.1 hypothetical protein -
QFW87_RS01545 331189..332163 - 975 WP_283189658.1 alpha/beta fold hydrolase -
QFW87_RS01550 332212..333288 - 1077 WP_283182554.1 PDDEXK nuclease domain-containing protein -
QFW87_RS01555 333551..333997 + 447 WP_283182555.1 carboxypeptidase regulatory-like domain-containing protein -
QFW87_RS01560 334072..334362 + 291 WP_283182556.1 YceK/YidQ family lipoprotein -
QFW87_RS01570 334701..334973 - 273 WP_283182557.1 oxidative damage protection protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-124)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 15094.43 Da        Isoelectric Point: 6.9687

>T282147 WP_283189655.1 NZ_CP125618:c329857-329450 [Pseudomonas sp. PMCC200344]
MIKYMLDTNICIFTIKNKPQIVREAFNRHNGQLCISAVTLMELFYGAEKSAAPEKNLAVIEGFVARLEVLPFDNEAAAHT
GMIRSELAKAGTPIGPYDHMIAGHARSRGFIVVTNNLREFERVPGLRAEDWVHPD

Download         Length: 408 bp

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8606.59 Da        Isoelectric Point: 4.3569

>AT282147 WP_283189656.1 NZ_CP125618:c330087-329857 [Pseudomonas sp. PMCC200344]
MEQTTLFMSNRSQAVRLPKAVAMPSDVKRVNVVAIGRTRIITPADETWDSWFDGDGVSADFMTDREQPADQERESF

Download         Length: 231 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References