Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068668..2068936 | Replicon | chromosome |
| Accession | NZ_CP125351 | ||
| Organism | Escherichia fergusonii strain XJ19MCE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068795..2068898 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068668..2068936 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QKW25_RS09990 | 2065218..2065880 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| QKW25_RS09995 | 2065904..2066560 | - | 657 | WP_196081538.1 | carbon-nitrogen hydrolase family protein | - |
| QKW25_RS10000 | 2066667..2066897 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| QKW25_RS10005 | 2067036..2067410 | + | 375 | WP_196081539.1 | CopC domain-containing protein YobA | - |
| QKW25_RS10010 | 2067413..2068285 | + | 873 | WP_196081540.1 | copper homeostasis membrane protein CopD | - |
| QKW25_RS10015 | 2068297..2068638 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 2068668..2068936 | - | 269 | - | - | Antitoxin |
| - | 2068795..2068898 | + | 104 | - | - | Toxin |
| QKW25_RS10020 | 2069032..2069688 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| QKW25_RS10025 | 2069689..2069880 | - | 192 | WP_002431587.1 | YebW family protein | - |
| QKW25_RS10030 | 2069985..2070221 | - | 237 | WP_002431586.1 | YebV family protein | - |
| QKW25_RS10035 | 2070340..2071779 | - | 1440 | WP_196081541.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T282086 NZ_CP125351:2068795-2068898 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT282086 NZ_CP125351:c2068936-2068668 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
