Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2015689..2015834 | Replicon | chromosome |
| Accession | NZ_CP125349 | ||
| Organism | Klebsiella pneumoniae strain WYKP594 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2015725..2015827 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2015689..2015834 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJR22_RS11265 (QJR22_11270) | 2010819..2012879 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QJR22_RS11270 (QJR22_11275) | 2012883..2013542 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QJR22_RS11275 (QJR22_11280) | 2013621..2013851 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QJR22_RS11280 (QJR22_11285) | 2013964..2014338 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QJR22_RS11285 (QJR22_11290) | 2014342..2015211 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QJR22_RS11290 (QJR22_11295) | 2015228..2015566 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2015689..2015834 | - | 146 | - | - | Antitoxin |
| - | 2015725..2015827 | + | 103 | - | - | Toxin |
| QJR22_RS11295 (QJR22_11300) | 2016202..2016345 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QJR22_RS11300 (QJR22_11305) | 2016450..2017418 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QJR22_RS11305 (QJR22_11310) | 2017575..2018228 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QJR22_RS11310 (QJR22_11315) | 2018225..2018416 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QJR22_RS11315 (QJR22_11320) | 2018514..2018753 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QJR22_RS11320 (QJR22_11325) | 2018869..2020302 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T282069 NZ_CP125349:2015725-2015827 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282069 NZ_CP125349:c2015834-2015689 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
