Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013582..2013727 | Replicon | chromosome |
| Accession | NZ_CP125343 | ||
| Organism | Klebsiella pneumoniae strain WYKP589 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013618..2013720 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013582..2013727 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QJR23_RS11235 (QJR23_11235) | 2008712..2010772 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QJR23_RS11240 (QJR23_11240) | 2010776..2011435 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QJR23_RS11245 (QJR23_11245) | 2011514..2011744 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QJR23_RS11250 (QJR23_11250) | 2011857..2012231 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QJR23_RS11255 (QJR23_11255) | 2012235..2013104 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| QJR23_RS11260 (QJR23_11260) | 2013121..2013459 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2013582..2013727 | - | 146 | - | - | Antitoxin |
| - | 2013618..2013720 | + | 103 | - | - | Toxin |
| QJR23_RS11265 (QJR23_11265) | 2014095..2014238 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QJR23_RS11270 (QJR23_11270) | 2014343..2015311 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QJR23_RS11275 (QJR23_11275) | 2015468..2016121 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QJR23_RS11280 (QJR23_11280) | 2016118..2016309 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QJR23_RS11285 (QJR23_11285) | 2016407..2016646 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QJR23_RS11290 (QJR23_11290) | 2016762..2018195 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T282042 NZ_CP125343:2013618-2013720 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT282042 NZ_CP125343:c2013727-2013582 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
