Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 1963926..1964418 Replicon chromosome
Accession NZ_CP125094
Organism Agrobacterium fabrum strain N33/94

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag G6L76_RS09680 Protein ID WP_080807612.1
Coordinates 1964149..1964418 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag G6L76_RS09675 Protein ID WP_080807616.1
Coordinates 1963926..1964168 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
G6L76_RS09655 (G6L76_009655) 1959176..1960168 + 993 WP_080811835.1 glutathione S-transferase family protein -
G6L76_RS09660 (G6L76_009660) 1960186..1960677 - 492 WP_010972183.1 NUDIX domain-containing protein -
G6L76_RS09665 (G6L76_009665) 1960744..1961694 + 951 WP_080807622.1 metallophosphoesterase -
G6L76_RS09670 (G6L76_009670) 1961899..1963608 - 1710 WP_080807619.1 2-isopropylmalate synthase -
G6L76_RS09675 (G6L76_009675) 1963926..1964168 - 243 WP_080807616.1 CopG family antitoxin Antitoxin
G6L76_RS09680 (G6L76_009680) 1964149..1964418 - 270 WP_080807612.1 BrnT family toxin Toxin
G6L76_RS09685 (G6L76_009685) 1964453..1965631 - 1179 WP_080807609.1 benzoate/H(+) symporter BenE family transporter -
G6L76_RS09690 (G6L76_009690) 1965894..1966976 + 1083 WP_080807606.1 esterase-like activity of phytase family protein -
G6L76_RS09695 (G6L76_009695) 1967049..1967693 - 645 WP_080807603.1 NrsF family protein -
G6L76_RS09700 (G6L76_009700) 1967690..1968238 - 549 WP_080728775.1 sigma-70 family RNA polymerase sigma factor -
G6L76_RS09705 (G6L76_009705) 1968424..1968681 + 258 WP_080807599.1 pentapeptide MXKDX repeat protein -
G6L76_RS09710 (G6L76_009710) 1968788..1969369 - 582 WP_006314627.1 ATP-dependent Clp protease proteolytic subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(5-80)

Antitoxin

CopG antitoxin

(7-71)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10820.24 Da        Isoelectric Point: 8.0187

>T281918 WP_080807612.1 NZ_CP125094:c1964418-1964149 [Agrobacterium fabrum]
MDFEFDPAKSESNKDKHGIDFVEARGLWLDEKRLVVPLETTLEERYIMIAQLRGKCWSAVYTYRHDRVRIISVRRSRDKE
KQRYEDDQR

Download         Length: 270 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9110.32 Da        Isoelectric Point: 4.5626

>AT281918 WP_080807616.1 NZ_CP125094:c1964168-1963926 [Agrobacterium fabrum]
MKTISAEEFDRKFDEGEDIDDYLDWSKASRPGLEMVHVDVDLPEKVLRRVDAEAARLGMTRQSLMAKWIAESLEAGRVGK

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References