Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 906187..906332 | Replicon | chromosome |
| Accession | NZ_CP125086 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain HVKP2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 906223..906325 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 906187..906332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFB74_RS05460 | 901317..903377 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QFB74_RS05465 | 903381..904040 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QFB74_RS05470 | 904119..904349 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QFB74_RS05475 | 904462..904836 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QFB74_RS05480 | 904840..905709 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| QFB74_RS05485 | 905726..906064 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 906187..906332 | - | 146 | - | - | Antitoxin |
| - | 906223..906325 | + | 103 | - | - | Toxin |
| QFB74_RS05490 | 906700..906843 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QFB74_RS05495 | 906948..907916 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QFB74_RS05500 | 908073..908726 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QFB74_RS05505 | 908723..908914 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QFB74_RS05510 | 909012..909251 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QFB74_RS05515 | 909367..910800 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281887 NZ_CP125086:906223-906325 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281887 NZ_CP125086:c906332-906187 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
