Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 714745..714890 | Replicon | chromosome |
| Accession | NZ_CP125083 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain HVKP1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 714781..714883 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 714745..714890 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QFB57_RS04275 | 709875..711935 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QFB57_RS04280 | 711939..712598 | - | 660 | WP_032446227.1 | exodeoxyribonuclease X | - |
| QFB57_RS04285 | 712677..712907 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QFB57_RS04290 | 713020..713394 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QFB57_RS04295 | 713398..714267 | + | 870 | WP_032446226.1 | copper homeostasis membrane protein CopD | - |
| QFB57_RS04300 | 714284..714622 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 714745..714890 | - | 146 | - | - | Antitoxin |
| - | 714781..714883 | + | 103 | - | - | Toxin |
| QFB57_RS04305 | 715258..715401 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QFB57_RS04310 | 715506..716474 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QFB57_RS04315 | 716631..717284 | + | 654 | WP_032446225.1 | protein-serine/threonine phosphatase | - |
| QFB57_RS04320 | 717281..717472 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QFB57_RS04325 | 717570..717809 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QFB57_RS04330 | 717925..719358 | - | 1434 | WP_032446224.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T281866 NZ_CP125083:714781-714883 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT281866 NZ_CP125083:c714890-714745 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
